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Description : Histone H2A (AHRD V3.3 *** A0A0V0H7M3_SOLCH)
Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Solanum release: Solyc10g006560 | |
| Cluster | HCCA clusters: Cluster_77 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 170948 | No alias | Histone superfamily protein | 0.03 | Orthogroups_2024-Update | |
| A4A49_29055 | No alias | putative histone h2a.4 | 0.04 | Orthogroups_2024-Update | |
| A4A49_30810 | No alias | histone h2ax | 0.03 | Orthogroups_2024-Update | |
| At1g08880 | No alias | Histone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178W8H7] | 0.03 | Orthogroups_2024-Update | |
| At4g27230 | No alias | Probable histone H2A.3 [Source:UniProtKB/Swiss-Prot;Acc:O81826] | 0.04 | Orthogroups_2024-Update | |
| At5g59870 | No alias | Probable histone H2A.7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJE8] | 0.04 | Orthogroups_2024-Update | |
| Brara.A02813.1 | No alias | histone *(H2A) | 0.05 | Orthogroups_2024-Update | |
| Brara.B01060.1 | No alias | histone *(H2A) | 0.03 | Orthogroups_2024-Update | |
| Brara.B03550.1 | No alias | histone *(H2A) | 0.03 | Orthogroups_2024-Update | |
| Brara.C01065.1 | No alias | histone *(H2A) | 0.05 | Orthogroups_2024-Update | |
| Brara.E02150.1 | No alias | histone *(H2A) | 0.03 | Orthogroups_2024-Update | |
| Brara.F00561.1 | No alias | histone *(H2A) | 0.03 | Orthogroups_2024-Update | |
| Brara.F02852.1 | No alias | histone *(H2A) | 0.06 | Orthogroups_2024-Update | |
| Brara.J01356.1 | No alias | histone *(H2A) | 0.05 | Orthogroups_2024-Update | |
| Cre06.g265350 | No alias | histone H2A 10 | 0.04 | Orthogroups_2024-Update | |
| Cre06.g268050 | No alias | histone H2A 10 | 0.03 | Orthogroups_2024-Update | |
| Cre06.g268300 | No alias | histone H2A 10 | 0.01 | Orthogroups_2024-Update | |
| Cre06.g273900 | No alias | histone H2A 10 | 0.01 | Orthogroups_2024-Update | |
| Cre06.g275850 | No alias | histone H2A 10 | 0.03 | Orthogroups_2024-Update | |
| Cre12.g504750 | No alias | histone H2A 10 | 0.02 | Orthogroups_2024-Update | |
| Cre13.g570100 | No alias | histone H2A 10 | 0.01 | Orthogroups_2024-Update | |
| Cre17.g708550 | No alias | histone H2A 10 | 0.03 | Orthogroups_2024-Update | |
| Cre17.g709200 | No alias | histone H2A 10 | 0.02 | Orthogroups_2024-Update | |
| Cre17.g711700 | No alias | histone H2A 10 | 0.04 | Orthogroups_2024-Update | |
| Cre17.g713400 | No alias | histone H2A 10 | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G041381 | No alias | histone H2A 2 | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G151726 | No alias | histone H2A 2 | 0.04 | Orthogroups_2024-Update | |
| Glyma.03G148100 | No alias | Histone superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.03G241800 | No alias | gamma histone variant H2AX | 0.06 | Orthogroups_2024-Update | |
| Glyma.12G215500 | No alias | histone H2A 10 | 0.05 | Orthogroups_2024-Update | |
| Glyma.13G286000 | No alias | histone H2A 10 | 0.05 | Orthogroups_2024-Update | |
| Glyma.13G333800 | No alias | histone H2A 12 | 0.04 | Orthogroups_2024-Update | |
| Glyma.13G333900 | No alias | histone H2A 12 | 0.05 | Orthogroups_2024-Update | |
| Glyma.13G334300 | No alias | histone H2A 12 | 0.06 | Orthogroups_2024-Update | |
| Glyma.15G040200 | No alias | histone H2A 12 | 0.05 | Orthogroups_2024-Update | |
| Glyma.15G040300 | No alias | histone H2A 12 | 0.07 | Orthogroups_2024-Update | |
| Glyma.15G040400 | No alias | histone H2A 12 | 0.03 | Orthogroups_2024-Update | |
| Glyma.19G151400 | No alias | gamma histone variant H2AX | 0.04 | Orthogroups_2024-Update | |
| Glyma.19G234100 | No alias | histone H2A 7 | 0.05 | Orthogroups_2024-Update | |
| HORVU1Hr1G005870.1 | No alias | histone *(H2A) | 0.03 | Orthogroups_2024-Update | |
| HORVU4Hr1G058810.1 | No alias | histone *(H2A) | 0.02 | Orthogroups_2024-Update | |
| HORVU5Hr1G026650.2 | No alias | histone *(H2A) | 0.03 | Orthogroups_2024-Update | |
| HORVU6Hr1G011490.2 | No alias | histone *(H2A) | 0.03 | Orthogroups_2024-Update | |
| HORVU6Hr1G021160.1 | No alias | histone *(H2A) | 0.04 | Orthogroups_2024-Update | |
| HORVU6Hr1G021260.2 | No alias | histone *(H2A) | 0.02 | Orthogroups_2024-Update | |
| HORVU7Hr1G100100.3 | No alias | histone *(H2A) | 0.04 | Orthogroups_2024-Update | |
| HORVU7Hr1G100110.4 | No alias | histone *(H2A) | 0.04 | Orthogroups_2024-Update | |
| HORVU7Hr1G100120.13 | No alias | histone *(H2A) | 0.03 | Orthogroups_2024-Update | |
| HORVU7Hr1G100400.2 | No alias | histone *(H2A) | 0.03 | Orthogroups_2024-Update | |
| Kfl00099_g21 | kfl00099_g21_v1.1 | (q2qpg9|h2axb_orysa : 166.0) Probable histone H2AXb -... | 0.03 | Orthogroups_2024-Update | |
| Kfl00125_0190 | kfl00125_0190_v1.1 | (p50567|h2a_chlre : 169.0) Histone H2A - Chlamydomonas... | 0.02 | Orthogroups_2024-Update | |
| MA_213048g0010 | No alias | (p50567|h2a_chlre : 115.0) Histone H2A - Chlamydomonas... | 0.03 | Orthogroups_2024-Update | |
| MA_22203g0020 | No alias | (at5g54640 : 145.0) Isolated from T-DNA insertion line,... | 0.04 | Orthogroups_2024-Update | |
| MA_427046g0010 | No alias | (q84nj4|h2a3_orysa : 144.0) Probable histone H2A.3 -... | 0.03 | Orthogroups_2024-Update | |
| MA_7320190g0010 | No alias | (p19177|h2a_petcr : 149.0) Histone H2A - Petroselinum... | 0.03 | Orthogroups_2024-Update | |
| MA_962778g0010 | No alias | (q2hu68|h2a1_medtr : 184.0) Probable histone H2A.1 -... | 0.06 | Orthogroups_2024-Update | |
| Mp2g00760.1 | No alias | histone (H2A) | 0.03 | Orthogroups_2024-Update | |
| Mp3g00840.1 | No alias | histone (H2A) | 0.02 | Orthogroups_2024-Update | |
| PSME_00008207-RA | No alias | (p02276|h2a2_wheat : 135.0) Histone H2A.2.1 - Triticum... | 0.03 | Orthogroups_2024-Update | |
| PSME_00008212-RA | No alias | (p50567|h2a_chlre : 107.0) Histone H2A - Chlamydomonas... | 0.03 | Orthogroups_2024-Update | |
| PSME_00015855-RA | No alias | (at5g54640 : 145.0) Isolated from T-DNA insertion line,... | 0.03 | Orthogroups_2024-Update | |
| PSME_00015856-RA | No alias | (q84nj4|h2a3_orysa : 144.0) Probable histone H2A.3 -... | 0.03 | Orthogroups_2024-Update | |
| PSME_00050693-RA | No alias | (at4g27230 : 166.0) Encodes HTA2, a histone H2A... | 0.01 | Orthogroups_2024-Update | |
| Pp1s72_85V6 | No alias | histone h2a | 0.01 | Orthogroups_2024-Update | |
| Seita.2G287100.1 | No alias | histone *(H2A) | 0.07 | Orthogroups_2024-Update | |
| Seita.3G063000.1 | No alias | histone *(H2A) | 0.06 | Orthogroups_2024-Update | |
| Seita.5G370600.1 | No alias | histone *(H2A) | 0.07 | Orthogroups_2024-Update | |
| Seita.5G370700.1 | No alias | histone *(H2A) | 0.02 | Orthogroups_2024-Update | |
| Seita.9G450000.1 | No alias | histone *(H2A) | 0.05 | Orthogroups_2024-Update | |
| Sobic.001G416800.1 | No alias | histone *(H2A) | 0.03 | Orthogroups_2024-Update | |
| Sopen01g042970 | No alias | Core histone H2A/H2B/H3/H4 | 0.06 | Orthogroups_2024-Update | |
| Sopen03g001250 | No alias | Core histone H2A/H2B/H3/H4 | 0.04 | Orthogroups_2024-Update | |
| Sopen06g035820 | No alias | Core histone H2A/H2B/H3/H4 | 0.04 | Orthogroups_2024-Update | |
| Sopen09g005140 | No alias | Core histone H2A/H2B/H3/H4 | 0.05 | Orthogroups_2024-Update | |
| Sopen09g029130 | No alias | Core histone H2A/H2B/H3/H4 | 0.05 | Orthogroups_2024-Update | |
| Sopen09g031570 | No alias | Core histone H2A/H2B/H3/H4 | 0.04 | Orthogroups_2024-Update | |
| Sopen10g002510 | No alias | Core histone H2A/H2B/H3/H4 | 0.05 | Orthogroups_2024-Update | |
| Sopen11g030880 | No alias | Core histone H2A/H2B/H3/H4 | 0.03 | Orthogroups_2024-Update | |
| Sopen11g030890 | No alias | Core histone H2A/H2B/H3/H4 | 0.03 | Orthogroups_2024-Update | |
| evm.model.contig_533.4 | No alias | (p16866|h2a4_volca : 182.0) Histone H2A-IV - Volvox... | 0.04 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000151 | ubiquitin ligase complex | IEP | Predicted GO |
| CC | GO:0000152 | nuclear ubiquitin ligase complex | IEP | Predicted GO |
| CC | GO:0000786 | nucleosome | IEP | Predicted GO |
| MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
| MF | GO:0003677 | DNA binding | IEP | Predicted GO |
| MF | GO:0003682 | chromatin binding | IEP | Predicted GO |
| MF | GO:0003689 | DNA clamp loader activity | IEP | Predicted GO |
| MF | GO:0004003 | ATP-dependent DNA helicase activity | IEP | Predicted GO |
| MF | GO:0004518 | nuclease activity | IEP | Predicted GO |
| MF | GO:0005337 | nucleoside transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0005488 | binding | IEP | Predicted GO |
| CC | GO:0005634 | nucleus | IEP | Predicted GO |
| CC | GO:0005663 | DNA replication factor C complex | IEP | Predicted GO |
| CC | GO:0005680 | anaphase-promoting complex | IEP | Predicted GO |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0006259 | DNA metabolic process | IEP | Predicted GO |
| BP | GO:0006260 | DNA replication | IEP | Predicted GO |
| BP | GO:0006270 | DNA replication initiation | IEP | Predicted GO |
| BP | GO:0006281 | DNA repair | IEP | Predicted GO |
| BP | GO:0006325 | chromatin organization | IEP | Predicted GO |
| BP | GO:0006334 | nucleosome assembly | IEP | Predicted GO |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Predicted GO |
| BP | GO:0007059 | chromosome segregation | IEP | Predicted GO |
| MF | GO:0008026 | ATP-dependent helicase activity | IEP | Predicted GO |
| MF | GO:0008094 | DNA-dependent ATPase activity | IEP | Predicted GO |
| MF | GO:0015932 | nucleobase-containing compound transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0016462 | pyrophosphatase activity | IEP | Predicted GO |
| BP | GO:0022607 | cellular component assembly | IEP | Predicted GO |
| CC | GO:0031461 | cullin-RING ubiquitin ligase complex | IEP | Predicted GO |
| CC | GO:0032993 | protein-DNA complex | IEP | Predicted GO |
| MF | GO:0033170 | protein-DNA loading ATPase activity | IEP | Predicted GO |
| BP | GO:0033554 | cellular response to stress | IEP | Predicted GO |
| BP | GO:0034622 | cellular protein-containing complex assembly | IEP | Predicted GO |
| BP | GO:0034728 | nucleosome organization | IEP | Predicted GO |
| MF | GO:0042623 | ATPase activity, coupled | IEP | Predicted GO |
| MF | GO:0043138 | 3'-5' DNA helicase activity | IEP | Predicted GO |
| MF | GO:0043140 | ATP-dependent 3'-5' DNA helicase activity | IEP | Predicted GO |
| CC | GO:0043226 | organelle | IEP | Predicted GO |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Predicted GO |
| BP | GO:0043933 | protein-containing complex subunit organization | IEP | Predicted GO |
| CC | GO:0044422 | organelle part | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044427 | chromosomal part | IEP | Predicted GO |
| CC | GO:0044446 | intracellular organelle part | IEP | Predicted GO |
| CC | GO:0044464 | cell part | IEP | Predicted GO |
| CC | GO:0044815 | DNA packaging complex | IEP | Predicted GO |
| MF | GO:0047429 | nucleoside-triphosphate diphosphatase activity | IEP | Predicted GO |
| BP | GO:0051301 | cell division | IEP | Predicted GO |
| BP | GO:0051716 | cellular response to stimulus | IEP | Predicted GO |
| BP | GO:0065003 | protein-containing complex assembly | IEP | Predicted GO |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | Predicted GO |
| MF | GO:0070035 | purine NTP-dependent helicase activity | IEP | Predicted GO |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Predicted GO |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
| MF | GO:1901505 | carbohydrate derivative transmembrane transporter activity | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR032454 | Histone_H2A_C | 80 | 113 |
| No external refs found! |