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  5. Solyc10g006580

Solyc10g006580


Description : ribosomal protein L2


Gene families : OG_42_0001760 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001760_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc10g006580
Cluster HCCA clusters: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
170971 No alias Ribosomal protein L2 family 0.1 Orthogroups_2024-Update
A4A49_56239 No alias 60s ribosomal protein l8 0.06 Orthogroups_2024-Update
A4A49_64891 No alias 60s ribosomal protein l8 0.03 Orthogroups_2024-Update
Bradi4g04120 No alias Ribosomal protein L2 family 0.09 Orthogroups_2024-Update
Brara.A00238.1 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.08 Orthogroups_2024-Update
Brara.G00216.1 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Brara.K01326.1 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Cre12.g535851 No alias Ribosomal protein L2 family 0.04 Orthogroups_2024-Update
Glyma.01G167300 No alias Ribosomal protein L2 family 0.07 Orthogroups_2024-Update
Glyma.02G049300 No alias Ribosomal protein L2 family 0.08 Orthogroups_2024-Update
Glyma.16G129700 No alias Ribosomal protein L2 family 0.03 Orthogroups_2024-Update
HORVU5Hr1G021730.2 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.08 Orthogroups_2024-Update
Kfl00779_0020 kfl00779_0020_v1.1 (at4g36130 : 456.0) Ribosomal protein L2 family;... 0.02 Orthogroups_2024-Update
Mp7g01860.1 No alias component RPL8 of LSU proteome component 0.08 Orthogroups_2024-Update
Mp7g08730.1 No alias component RPL8 of LSU proteome component 0.03 Orthogroups_2024-Update
PSME_00025506-RA No alias (at4g36130 : 481.0) Ribosomal protein L2 family;... 0.04 Orthogroups_2024-Update
Potri.005G115700 No alias Ribosomal protein L2 family 0.04 Orthogroups_2024-Update
Pp1s37_247V6 No alias 60s ribosomal protein l2 0.07 Orthogroups_2024-Update
Seita.2G112000.1 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.09 Orthogroups_2024-Update
Seita.3G330100.1 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Sobic.002G115000.1 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Sobic.008G135000.1 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.11 Orthogroups_2024-Update
Sopen07g032020 No alias Ribosomal Proteins L2, C-terminal domain 0.1 Orthogroups_2024-Update
Sopen10g002530 No alias Ribosomal Proteins L2, C-terminal domain 0.09 Orthogroups_2024-Update
Sopen12g001310 No alias Ribosomal Proteins L2, C-terminal domain 0.05 Orthogroups_2024-Update
evm.model.contig_2057.10 No alias (at4g36130 : 380.0) Ribosomal protein L2 family;... 0.14 Orthogroups_2024-Update
evm.model.tig00020965.22 No alias (at2g18020 : 400.0) embryo defective 2296 (EMB2296);... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
InterPro domains Description Start Stop
IPR022669 Ribosomal_L2_C 98 230
IPR022666 Rbsml_prot_L2_RNA-bd_dom 13 90
No external refs found!