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  5. Solyc10g006700

Solyc10g006700


Description : Calcium-binding family protein (AHRD V3.3 *** B9I910_POPTR)


Gene families : OG_42_0000762 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000762_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc10g006700
Cluster HCCA clusters: Cluster_287

Target Alias Description ECC score Gene Family Method Actions
Bradi3g02210 No alias Calcium-binding EF-hand family protein 0.04 Orthogroups_2024-Update
Glyma.06G258000 No alias Calcium-binding EF-hand family protein 0.03 Orthogroups_2024-Update
Glyma.15G065700 No alias Calcium-binding EF-hand family protein 0.03 Orthogroups_2024-Update
Glyma.16G022400 No alias Calcium-binding EF-hand family protein 0.03 Orthogroups_2024-Update
MA_8085699g0010 No alias (at2g46600 : 81.3) Calcium-binding EF-hand family... 0.03 Orthogroups_2024-Update
Seita.1G107200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.4G255900.1 No alias Unknown function 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
CC GO:0005849 mRNA cleavage factor complex IEP Predicted GO
BP GO:0006378 mRNA polyadenylation IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
MF GO:0008146 sulfotransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 43 94
No external refs found!