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  5. Solyc10g006730

Solyc10g006730


Description : Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9GVT5_POPTR)


Gene families : OG_42_0002530 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002530_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc10g006730
Cluster HCCA clusters: Cluster_212

Target Alias Description ECC score Gene Family Method Actions
Brara.F03096.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0004871 obsolete signal transducer activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
CC GO:0005834 heterotrimeric G-protein complex IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
CC GO:1905360 GTPase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 293 340
IPR002885 Pentatricopeptide_repeat 394 442
IPR002885 Pentatricopeptide_repeat 469 492
IPR002885 Pentatricopeptide_repeat 172 201
IPR002885 Pentatricopeptide_repeat 76 100
IPR002885 Pentatricopeptide_repeat 235 263
IPR002885 Pentatricopeptide_repeat 203 231
IPR019734 TPR_repeat 535 556
No external refs found!