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  5. MA_10377235g0010

MA_10377235g0010


Description : (at2g40610 : 412.0) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.; expansin A8 (EXPA8); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A2 (TAIR:AT5G05290.1); Has 2297 Blast hits to 2294 proteins in 186 species: Archae - 0; Bacteria - 19; Metazoa - 0; Fungi - 45; Plants - 2187; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). & (q40636|expa2_orysa : 401.0) Expansin-A2 precursor (OsEXPA2) (Alpha-expansin-2) (OsEXP2) (OsaEXPa1.23) (RiExB) (RiExC) - Oryza sativa (Rice) & (reliability: 824.0) & (original description: no original description)


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_10377235g0010
Cluster HCCA clusters: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
143857 No alias expansin A4 0.02 Orthogroups_2024-Update
A4A49_13869 No alias expansin-a3 0.02 Orthogroups_2024-Update
A4A49_26789 No alias expansin-a3 0.02 Orthogroups_2024-Update
A4A49_61517 No alias expansin-a23 0.04 Orthogroups_2024-Update
A4A49_64370 No alias expansin-a1 0.03 Orthogroups_2024-Update
At1g20190 No alias Expansin-A11 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU3] 0.04 Orthogroups_2024-Update
At5g05290 No alias Expansin-A2 [Source:UniProtKB/Swiss-Prot;Acc:Q38866] 0.03 Orthogroups_2024-Update
Bradi2g53580 No alias expansin A8 0.02 Orthogroups_2024-Update
Brara.B01279.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Brara.C02851.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Brara.F03390.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
GRMZM2G094523 No alias expansin A1 0.02 Orthogroups_2024-Update
Glyma.15G037700 No alias expansin A4 0.02 Orthogroups_2024-Update
Glyma.18G038000 No alias Barwin-like endoglucanases superfamily protein 0.02 Orthogroups_2024-Update
Glyma.18G265400 No alias expansin A23 0.03 Orthogroups_2024-Update
LOC_Os01g60770 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g51040 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g15840 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
MA_100868g0010 No alias (at2g40610 : 292.0) member of Alpha-Expansin Gene... 0.04 Orthogroups_2024-Update
MA_172610g0010 No alias (at2g40610 : 331.0) member of Alpha-Expansin Gene... 0.04 Orthogroups_2024-Update
MA_86877g0010 No alias (at1g69530 : 387.0) Member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
Mp3g09760.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
PSME_00011357-RA No alias (at2g40610 : 390.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
PSME_00014026-RA No alias (at1g69530 : 221.0) Member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
PSME_00018430-RA No alias (at2g40610 : 404.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
PSME_00029310-RA No alias (at1g26770 : 386.0) Encodes an expansin. Naming... 0.04 Orthogroups_2024-Update
PSME_00045415-RA No alias (at4g01630 : 291.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
PSME_00050247-RA No alias (at2g40610 : 400.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
PSME_00051817-RA No alias (at1g20190 : 379.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
Potri.002G184700 No alias expansin A17 0.03 Orthogroups_2024-Update
Potri.006G086100 No alias Barwin-like endoglucanases superfamily protein 0.03 Orthogroups_2024-Update
Potri.013G154700 No alias expansin A8 0.02 Orthogroups_2024-Update
Potri.016G098700 No alias Barwin-like endoglucanases superfamily protein 0.04 Orthogroups_2024-Update
Seita.9G032400.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Sobic.001G033300.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Sobic.004G238801.1 No alias alpha-class expansin 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004180 carboxypeptidase activity IEP Predicted GO
MF GO:0004181 metallocarboxypeptidase activity IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
BP GO:0006783 heme biosynthetic process IEP Predicted GO
BP GO:0006784 heme a biosynthetic process IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
MF GO:0008235 metalloexopeptidase activity IEP Predicted GO
MF GO:0008238 exopeptidase activity IEP Predicted GO
MF GO:0008373 sialyltransferase activity IEP Predicted GO
BP GO:0009605 response to external stimulus IEP Predicted GO
BP GO:0009607 response to biotic stimulus IEP Predicted GO
BP GO:0009617 response to bacterium IEP Predicted GO
BP GO:0009620 response to fungus IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0040008 regulation of growth IEP Predicted GO
BP GO:0042168 heme metabolic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0042742 defense response to bacterium IEP Predicted GO
BP GO:0043207 response to external biotic stimulus IEP Predicted GO
BP GO:0043545 molybdopterin cofactor metabolic process IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0045926 negative regulation of growth IEP Predicted GO
BP GO:0046148 pigment biosynthetic process IEP Predicted GO
BP GO:0046160 heme a metabolic process IEP Predicted GO
BP GO:0050832 defense response to fungus IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:0051186 cofactor metabolic process IEP Predicted GO
BP GO:0051188 cofactor biosynthetic process IEP Predicted GO
BP GO:0051189 prosthetic group metabolic process IEP Predicted GO
BP GO:0051704 multi-organism process IEP Predicted GO
BP GO:0051707 response to other organism IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
BP GO:0098542 defense response to other organism IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 61 147
IPR007117 Expansin_CBD 159 236
No external refs found!