MA_1040421g0010

Description : (at3g45980 : 114.0) Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases as well as the UBC1 and UBC2 E2 ubiquitin conjugating enzymes. Lysine 146 appears to be the site of the ubiquitin addition.; HTB9; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT1G07790.1); Has 3616 Blast hits to 3469 proteins in 351 species: Archae - 0; Bacteria - 64; Metazoa - 2275; Fungi - 213; Plants - 487; Viruses - 0; Other Eukaryotes - 577 (source: NCBI BLink). & (q1s9i9|h2b1_medtr : 111.0) Probable histone H2B.1 - Medicago truncatula (Barrel medic) & (reliability: 228.0) & (original description: no original description)

Gene families : OG_42_0000153 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000153_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Picea release: MA_1040421g0010
Cluster	HCCA clusters: Cluster_294

Target	Alias	Description	ECC score	Gene Family Method
Bradi1g08860	No alias	Histone superfamily protein	0.04	Orthogroups_2024-Update
Bradi3g54520	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
GRMZM2G046841	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
GRMZM2G306258	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Glyma.11G141700	No alias	Histone superfamily protein	0.06	Orthogroups_2024-Update
Glyma.12G179100	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
HORVU1Hr1G058500.1	No alias	histone *(H2B)	0.02	Orthogroups_2024-Update
LOC_Os01g05900	No alias	Core histone H2A/H2B/H3/H4 domain containing protein,...	0.03	Orthogroups_2024-Update
MA_10435143g0020	No alias	(at3g45980 : 145.0) Encodes a histone 2B (H2B) protein....	0.03	Orthogroups_2024-Update
MA_10436516g0010	No alias	(at3g45980 : 175.0) Encodes a histone 2B (H2B) protein....	0.03	Orthogroups_2024-Update
MA_10436516g0020	No alias	(at3g45980 : 175.0) Encodes a histone 2B (H2B) protein....	0.03	Orthogroups_2024-Update
MA_10436516g0030	No alias	(at3g45980 : 106.0) Encodes a histone 2B (H2B) protein....	0.04	Orthogroups_2024-Update
Mp6g07010.1	No alias	histone (H2B)	0.02	Orthogroups_2024-Update
Pp1s37_236V6	No alias	histone	0.02	Orthogroups_2024-Update
Seita.1G291600.1	No alias	histone *(H2B)	0.02	Orthogroups_2024-Update
Seita.5G107600.1	No alias	histone *(H2B)	0.03	Orthogroups_2024-Update
evm.model.contig_498.4	No alias	(p16868\|h2b4_volca : 127.0) Histone H2B.4 (H2B-IV) -...	0.01	Orthogroups_2024-Update
evm.model.contig_533.3	No alias	(p16868\|h2b4_volca : 127.0) Histone H2B.4 (H2B-IV) -...	0.01	Orthogroups_2024-Update
evm.model.tig00000944.18	No alias	(p16868\|h2b4_volca : 122.0) Histone H2B.4 (H2B-IV) -...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004611	phosphoenolpyruvate carboxykinase activity	IEP	Predicted GO
MF	GO:0004612	phosphoenolpyruvate carboxykinase (ATP) activity	IEP	Predicted GO
MF	GO:0005102	signaling receptor binding	IEP	Predicted GO
CC	GO:0005576	extracellular region	IEP	Predicted GO
BP	GO:0006094	gluconeogenesis	IEP	Predicted GO
BP	GO:0006810	transport	IEP	Predicted GO
BP	GO:0006887	exocytosis	IEP	Predicted GO
MF	GO:0008083	growth factor activity	IEP	Predicted GO
BP	GO:0008283	cell proliferation	IEP	Predicted GO
BP	GO:0016192	vesicle-mediated transport	IEP	Predicted GO
CC	GO:0016459	myosin complex	IEP	Predicted GO
MF	GO:0016829	lyase activity	IEP	Predicted GO
MF	GO:0016830	carbon-carbon lyase activity	IEP	Predicted GO
MF	GO:0016832	aldehyde-lyase activity	IEP	Predicted GO
BP	GO:0019319	hexose biosynthetic process	IEP	Predicted GO
BP	GO:0022406	membrane docking	IEP	Predicted GO
MF	GO:0030545	receptor regulator activity	IEP	Predicted GO
BP	GO:0032940	secretion by cell	IEP	Predicted GO
BP	GO:0046364	monosaccharide biosynthetic process	IEP	Predicted GO
BP	GO:0046903	secretion	IEP	Predicted GO
MF	GO:0048018	receptor ligand activity	IEP	Predicted GO
BP	GO:0048278	vesicle docking	IEP	Predicted GO
BP	GO:0051179	localization	IEP	Predicted GO
BP	GO:0051234	establishment of localization	IEP	Predicted GO
BP	GO:0051640	organelle localization	IEP	Predicted GO
BP	GO:0140056	organelle localization by membrane tethering	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR007125	Histone_H2A/H2B/H3	6	108

External Links

No external refs found!

MA_1040421g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation