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  5. MA_10426467g0010

MA_10426467g0010


Description : (at5g03760 : 471.0) encodes a beta-mannan synthase that is required for agrobacterium-mediated plant genetic transformation involves a complex interaction between the bacterium and the host plant. 3' UTR is involved in transcriptional regulation and the gene is expressed in the elongation zone of the root.; ATCSLA09; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: cellulose synthase-like A02 (TAIR:AT5G22740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 914.0) & (original description: no original description)


Gene families : OG_42_0000129 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000129_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_10426467g0010
Cluster HCCA clusters: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
140200 No alias Cellulose-synthase-like C5 0.03 Orthogroups_2024-Update
230176 No alias Nucleotide-diphospho-sugar transferases superfamily protein 0.03 Orthogroups_2024-Update
A4A49_02158 No alias putative xyloglucan glycosyltransferase 6 0.04 Orthogroups_2024-Update
At5g03760 No alias RAT4 [Source:UniProtKB/TrEMBL;Acc:A0A178UH35] 0.04 Orthogroups_2024-Update
Bradi3g36697 No alias Nucleotide-diphospho-sugar transferases superfamily protein 0.03 Orthogroups_2024-Update
Brara.C02554.1 No alias 1,4-beta-glucan synthase *(CSLC) & EC_2.4 glycosyltransferase 0.03 Orthogroups_2024-Update
Glyma.16G087600 No alias Cellulose-synthase-like C6 0.03 Orthogroups_2024-Update
HORVU3Hr1G109930.12 No alias EC_2.4 glycosyltransferase & mannan synthase *(CSLA) 0.03 Orthogroups_2024-Update
LOC_Os03g26044 No alias CSLA5 - cellulose synthase-like family A; mannan... 0.02 Orthogroups_2024-Update
LOC_Os05g43530 No alias CSLC7 - cellulose synthase-like family C, expressed 0.02 Orthogroups_2024-Update
Mp8g17530.1 No alias 1,4-beta-glucan synthase (CSLC) 0.02 Orthogroups_2024-Update
PSME_00011823-RA No alias (at5g03760 : 850.0) encodes a beta-mannan synthase that... 0.07 Orthogroups_2024-Update
PSME_00012411-RA No alias (at5g03760 : 302.0) encodes a beta-mannan synthase that... 0.03 Orthogroups_2024-Update
Pp1s162_130V6 No alias cellulose synthase-like glycosyltransferase family 2 0.03 Orthogroups_2024-Update
Pp1s36_214V6 No alias cellulose synthase-like A3, glycosyltransferase family 2... 0.05 Orthogroups_2024-Update
Pp1s36_62V6 No alias cellulose synthase-like A2, glycosyltransferase family 2... 0.04 Orthogroups_2024-Update
Pp1s65_194V6 No alias cellulose synthase-like A1, glycosyltransferase family 2... 0.05 Orthogroups_2024-Update
Seita.9G075000.1 No alias 1,4-beta-glucan synthase *(CSLC) & EC_2.4 glycosyltransferase 0.04 Orthogroups_2024-Update
Sobic.001G075600.1 No alias 1,4-beta-glucan synthase *(CSLC) & EC_2.4 glycosyltransferase 0.05 Orthogroups_2024-Update
Solyc09g008990 No alias Glucomannan 4-beta-mannosyltransferase 9 (AHRD V3.3 *-*... 0.04 Orthogroups_2024-Update
Solyc09g009010 No alias Cellulose synthase-like protein (AHRD V3.3 *** L0ASI8_POPTO) 0.04 Orthogroups_2024-Update
Solyc11g007600 No alias Cellulose synthase-like protein (AHRD V3.3 *** L0ASI8_POPTO) 0.02 Orthogroups_2024-Update
Solyc11g066820 No alias Cellulose synthase-like protein (AHRD V3.3 *** L0ATP8_POPTO) 0.02 Orthogroups_2024-Update
Sopen09g003750 No alias Glycosyltransferase like family 2 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0004664 prephenate dehydratase activity IEP Predicted GO
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Predicted GO
BP GO:0006558 L-phenylalanine metabolic process IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
BP GO:0009094 L-phenylalanine biosynthetic process IEP Predicted GO
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
BP GO:0016049 cell growth IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
BP GO:0040007 growth IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
MF GO:0051743 red chlorophyll catabolite reductase activity IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Predicted GO
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001173 Glyco_trans_2-like 12 141
No external refs found!