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  5. MA_10426551g0010

MA_10426551g0010


Description : (p59287|cass_ricco : 248.0) Casbene synthase, chloroplast precursor (EC 4.2.3.8) - Ricinus communis (Castor bean) & (at4g16730 : 231.0) In the Col ecotype, no functional protein is encoded at this locus due to the presence of a two-base (AT) insertion 184 nucleotides downstream of the start codon leading to a frame shift and premature translational termination. However, in the Ws ecotype, a functional terpene synthase that localizes to the chloroplast is encoded at this locus. It can catalyze the synthesis of (E)-beta-ocimene and (E,E)-alpha farnesene in vitro, but, it has more activity as an (E)-beta-ocimene synthase activity in vivo. This may reflect the greater availability of the GPP precursor of (E)-beta-ocimene than of the FPP precursor of (E,E)-alpha-farnesene in the chloroplasts where the Ws TPS02 is present.; terpene synthase 02 (TPS02); INVOLVED IN: metabolic process; EXPRESSED IN: sepal, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase 03 (TAIR:AT4G16740.1); Has 1736 Blast hits to 1706 proteins in 177 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1730; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). & (reliability: 462.0) & (original description: no original description)


Gene families : OG_42_0000258 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000258_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_10426551g0010
Cluster HCCA clusters: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
At2g24210 No alias Tricyclene synthase, chloroplastic... 0.03 Orthogroups_2024-Update
At3g25830 No alias 1,8-cineole synthase 2, chloroplastic... 0.03 Orthogroups_2024-Update
Bradi2g08220 No alias terpene synthase 10 0.02 Orthogroups_2024-Update
Brara.C02651.1 No alias EC_4.2 carbon-oxygen lyase &... 0.02 Orthogroups_2024-Update
Glyma.12G102000 No alias terpene synthase-like sequence-1,8-cineole 0.03 Orthogroups_2024-Update
MA_10430954g0010 No alias (at1g61680 : 139.0) terpene synthase 14 (TPS14);... 0.05 Orthogroups_2024-Update
MA_17608g0020 No alias (at4g16740 : 180.0) Encodes an (E,E)-alpha-farnesene... 0.04 Orthogroups_2024-Update
MA_1830g0010 No alias (p59287|cass_ricco : 269.0) Casbene synthase,... 0.03 Orthogroups_2024-Update
MA_8002141g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00003263-RA No alias (at4g02780 : 383.0) Catalyzes the conversion of... 0.03 Orthogroups_2024-Update
PSME_00003483-RA No alias (p93665|dcs1_goshi : 253.0) (+)-delta-cadinene synthase... 0.05 Orthogroups_2024-Update
PSME_00007192-RA No alias (at4g16730 : 155.0) In the Col ecotype, no functional... 0.03 Orthogroups_2024-Update
PSME_00008408-RA No alias (at4g02780 : 401.0) Catalyzes the conversion of... 0.06 Orthogroups_2024-Update
PSME_00010279-RA No alias (at4g02780 : 364.0) Catalyzes the conversion of... 0.04 Orthogroups_2024-Update
PSME_00015727-RA No alias (at4g16730 : 256.0) In the Col ecotype, no functional... 0.04 Orthogroups_2024-Update
PSME_00017295-RA No alias (at4g02780 : 133.0) Catalyzes the conversion of... 0.04 Orthogroups_2024-Update
PSME_00019425-RA No alias (p59287|cass_ricco : 275.0) Casbene synthase,... 0.04 Orthogroups_2024-Update
PSME_00030201-RA No alias (at4g02780 : 365.0) Catalyzes the conversion of... 0.08 Orthogroups_2024-Update
PSME_00030854-RA No alias (p59287|cass_ricco : 223.0) Casbene synthase,... 0.03 Orthogroups_2024-Update
PSME_00034478-RA No alias (at3g25810 : 192.0) Terpenoid cyclases/Protein... 0.03 Orthogroups_2024-Update
PSME_00035829-RA No alias (q40577|5eas_tobac : 197.0) Aristolochene synthase (EC... 0.03 Orthogroups_2024-Update
PSME_00037858-RA No alias (at4g16740 : 161.0) Encodes an (E,E)-alpha-farnesene... 0.03 Orthogroups_2024-Update
PSME_00041351-RA No alias (at1g70080 : 113.0) Terpenoid cyclases/Protein... 0.03 Orthogroups_2024-Update
PSME_00044370-RA No alias (at4g16730 : 128.0) In the Col ecotype, no functional... 0.06 Orthogroups_2024-Update
Potri.011G031800 No alias terpene synthase-like sequence-1,8-cineole 0.03 Orthogroups_2024-Update
Potri.019G022900 No alias terpene synthase-like sequence-1,8-cineole 0.04 Orthogroups_2024-Update
Solyc01g105870 No alias (E)-beta-ocimene synthase (AHRD V1 **** Q5CD81_CITUN)%3B... 0.04 Orthogroups_2024-Update
Solyc01g105960 No alias (E)-beta-ocimene synthase 0.06 Orthogroups_2024-Update
Sopen01g048290 No alias Terpene synthase family, metal binding domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEA InterProScan predictions
MF GO:0010333 terpene synthase activity IEA InterProScan predictions
MF GO:0016829 lyase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004421 hydroxymethylglutaryl-CoA synthase activity IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
MF GO:0008131 primary amine oxidase activity IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
BP GO:0017144 drug metabolic process IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0048038 quinone binding IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901135 carbohydrate derivative metabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR005630 Terpene_synthase_metal-bd 272 537
IPR001906 Terpene_synth_N 52 236
No external refs found!