1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_10426597g0010

MA_10426597g0010


Description : (at5g01720 : 522.0) RNI-like superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G27920.1); Has 15959 Blast hits to 6468 proteins in 357 species: Archae - 0; Bacteria - 920; Metazoa - 6194; Fungi - 1434; Plants - 4975; Viruses - 16; Other Eukaryotes - 2420 (source: NCBI BLink). & (reliability: 1044.0) & (original description: no original description)


Gene families : OG_42_0001322 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001322_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_10426597g0010
Cluster HCCA clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
Seita.7G329600.1 No alias substrate adaptor *(RAE1) of SCF E3 ubiquitin ligase complex 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 462 484
IPR001611 Leu-rich_rpt 284 307
IPR001611 Leu-rich_rpt 438 460
IPR001611 Leu-rich_rpt 359 382
IPR001611 Leu-rich_rpt 591 612
IPR001611 Leu-rich_rpt 514 537
IPR001611 Leu-rich_rpt 487 511
No external refs found!