Description : (at5g15520 : 163.0) Ribosomal protein S19e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, nucleolus, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S19e, conserved site (InterPro:IPR018277), Ribosomal protein S19e (InterPro:IPR001266); BEST Arabidopsis thaliana protein match is: Ribosomal protein S19e family protein (TAIR:AT3G02080.1); Has 1130 Blast hits to 1130 proteins in 395 species: Archae - 215; Bacteria - 1; Metazoa - 402; Fungi - 149; Plants - 164; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink). & (p40978|rs19_orysa : 154.0) 40S ribosomal protein S19 - Oryza sativa (Rice) & (reliability: 326.0) & (original description: no original description)
Gene families : OG_42_0001908 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001908_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_10427917g0020 | |
Cluster | HCCA clusters: Cluster_144 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
153225 | No alias | Ribosomal protein S19e family protein | 0.05 | Orthogroups_2024-Update | |
A4A49_38035 | No alias | 40s ribosomal protein s19-3 | 0.05 | Orthogroups_2024-Update | |
At5g61170 | No alias | 40S ribosomal protein S19-3... | 0.03 | Orthogroups_2024-Update | |
Bradi4g08690 | No alias | Ribosomal protein S19e family protein | 0.04 | Orthogroups_2024-Update | |
Brara.C02969.1 | No alias | component *(eS19) of small ribosomal-subunit (SSU) proteome | 0.02 | Orthogroups_2024-Update | |
Brara.C04231.1 | No alias | component *(eS19) of small ribosomal-subunit (SSU) proteome | 0.02 | Orthogroups_2024-Update | |
Cre02.g106600 | No alias | Ribosomal protein S19e family protein | 0.03 | Orthogroups_2024-Update | |
Glyma.04G132900 | No alias | Ribosomal protein S19e family protein | 0.05 | Orthogroups_2024-Update | |
Glyma.13G057500 | No alias | Ribosomal protein S19e family protein | 0.03 | Orthogroups_2024-Update | |
HORVU5Hr1G052240.6 | No alias | component *(eS19) of small ribosomal-subunit (SSU) proteome | 0.04 | Orthogroups_2024-Update | |
Mp1g27380.1 | No alias | component RPS19 of SSU proteome | 0.04 | Orthogroups_2024-Update | |
PSME_00007653-RA | No alias | (at5g15520 : 237.0) Ribosomal protein S19e family... | 0.04 | Orthogroups_2024-Update | |
Potri.015G056100 | No alias | Ribosomal protein S19e family protein | 0.03 | Orthogroups_2024-Update | |
Potri.017G092200 | No alias | Ribosomal protein S19e family protein | 0.03 | Orthogroups_2024-Update | |
Pp1s21_363V6 | No alias | 40s ribosomal protein s19 | 0.06 | Orthogroups_2024-Update | |
Pp1s34_111V6 | No alias | 40s ribosomal protein s19 | 0.06 | Orthogroups_2024-Update | |
Pp1s54_217V6 | No alias | 40s ribosomal protein s19 | 0.05 | Orthogroups_2024-Update | |
Pp1s84_153V6 | No alias | 40s ribosomal protein s19 | 0.04 | Orthogroups_2024-Update | |
Pp1s98_182V6 | No alias | 40s ribosomal protein s19 | 0.05 | Orthogroups_2024-Update | |
Seita.9G361400.1 | No alias | component *(eS19) of small ribosomal-subunit (SSU) proteome | 0.05 | Orthogroups_2024-Update | |
Seita.9G575800.1 | No alias | component *(eS19) of small ribosomal-subunit (SSU) proteome | 0.03 | Orthogroups_2024-Update | |
Sobic.007G178600.1 | No alias | component *(eS19) of small ribosomal-subunit (SSU) proteome | 0.05 | Orthogroups_2024-Update | |
Solyc03g115360 | No alias | 40S ribosomal protein S19-like (AHRD V3.3 *** Q2VCJ6_SOLTU) | 0.02 | Orthogroups_2024-Update | |
Solyc12g039120 | No alias | 40S ribosomal protein S19-like (AHRD V3.3 *** Q2VCJ6_SOLTU) | 0.02 | Orthogroups_2024-Update | |
Sopen03g034360 | No alias | Ribosomal protein S19e | 0.02 | Orthogroups_2024-Update | |
Sopen12g019420 | No alias | Ribosomal protein S19e | 0.04 | Orthogroups_2024-Update | |
evm.model.contig_3407.10 | No alias | (at3g02080 : 155.0) Ribosomal protein S19e family... | 0.05 | Orthogroups_2024-Update | |
evm.model.tig00021017.6 | No alias | (at3g02080 : 183.0) Ribosomal protein S19e family... | 0.05 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | InterProScan predictions |
CC | GO:0005840 | ribosome | IEA | InterProScan predictions |
BP | GO:0006412 | translation | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003743 | translation initiation factor activity | IEP | Predicted GO |
MF | GO:0003839 | gamma-glutamylcyclotransferase activity | IEP | Predicted GO |
CC | GO:0005622 | intracellular | IEP | Predicted GO |
CC | GO:0005737 | cytoplasm | IEP | Predicted GO |
CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Predicted GO |
BP | GO:0006575 | cellular modified amino acid metabolic process | IEP | Predicted GO |
BP | GO:0006749 | glutathione metabolic process | IEP | Predicted GO |
BP | GO:0006751 | glutathione catabolic process | IEP | Predicted GO |
BP | GO:0006790 | sulfur compound metabolic process | IEP | Predicted GO |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | Predicted GO |
MF | GO:0016840 | carbon-nitrogen lyase activity | IEP | Predicted GO |
MF | GO:0016842 | amidine-lyase activity | IEP | Predicted GO |
MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
BP | GO:0042219 | cellular modified amino acid catabolic process | IEP | Predicted GO |
BP | GO:0043171 | peptide catabolic process | IEP | Predicted GO |
BP | GO:0044273 | sulfur compound catabolic process | IEP | Predicted GO |
BP | GO:0051187 | cofactor catabolic process | IEP | Predicted GO |
BP | GO:1901565 | organonitrogen compound catabolic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001266 | Ribosomal_S19e | 4 | 99 |
No external refs found! |