Description : (at3g45980 : 145.0) Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases as well as the UBC1 and UBC2 E2 ubiquitin conjugating enzymes. Lysine 146 appears to be the site of the ubiquitin addition.; HTB9; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT1G07790.1); Has 3616 Blast hits to 3469 proteins in 351 species: Archae - 0; Bacteria - 64; Metazoa - 2275; Fungi - 213; Plants - 487; Viruses - 0; Other Eukaryotes - 577 (source: NCBI BLink). & (o22582|h2b_goshi : 143.0) Histone H2B - Gossypium hirsutum (Upland cotton) & (reliability: 290.0) & (original description: no original description)
Gene families : OG_42_0000153 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000153_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_10428006g0010 | |
Cluster | HCCA clusters: Cluster_12 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
At5g59910 | No alias | Histone H2B [Source:UniProtKB/TrEMBL;Acc:Q1H5F2] | 0.03 | Orthogroups_2024-Update | |
Bradi1g08860 | No alias | Histone superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi2g23230 | No alias | Histone superfamily protein | 0.04 | Orthogroups_2024-Update | |
Bradi2g27760 | No alias | Histone superfamily protein | 0.02 | Orthogroups_2024-Update | |
Bradi3g54520 | No alias | Histone superfamily protein | 0.03 | Orthogroups_2024-Update | |
Cre06.g264800 | No alias | Histone superfamily protein | 0.01 | Orthogroups_2024-Update | |
Cre06.g268250 | No alias | Histone superfamily protein | 0.01 | Orthogroups_2024-Update | |
Cre06.g274250 | No alias | Histone superfamily protein | 0.01 | Orthogroups_2024-Update | |
Cre06.g274750 | No alias | Histone superfamily protein | 0.01 | Orthogroups_2024-Update | |
Cre06.g276550 | No alias | Histone superfamily protein | 0.01 | Orthogroups_2024-Update | |
Cre06.g276900 | No alias | Histone superfamily protein | 0.01 | Orthogroups_2024-Update | |
Cre12.g504700 | No alias | Histone superfamily protein | 0.01 | Orthogroups_2024-Update | |
Cre17.g711750 | No alias | Histone superfamily protein | 0.01 | Orthogroups_2024-Update | |
GRMZM2G046841 | No alias | Histone superfamily protein | 0.03 | Orthogroups_2024-Update | |
GRMZM2G141432 | No alias | Histone superfamily protein | 0.04 | Orthogroups_2024-Update | |
GRMZM2G306258 | No alias | Histone superfamily protein | 0.03 | Orthogroups_2024-Update | |
GRMZM2G401147 | No alias | Histone superfamily protein | 0.02 | Orthogroups_2024-Update | |
GRMZM2G472696 | No alias | Histone superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.11G141700 | No alias | Histone superfamily protein | 0.05 | Orthogroups_2024-Update | |
Glyma.20G191600 | No alias | Histone superfamily protein | 0.03 | Orthogroups_2024-Update | |
HORVU1Hr1G056530.1 | No alias | histone *(H2B) | 0.02 | Orthogroups_2024-Update | |
HORVU1Hr1G058440.4 | No alias | histone *(H2B) | 0.04 | Orthogroups_2024-Update | |
HORVU1Hr1G078480.6 | No alias | histone *(H2B) | 0.03 | Orthogroups_2024-Update | |
HORVU3Hr1G013530.1 | No alias | histone *(H2B) | 0.02 | Orthogroups_2024-Update | |
HORVU3Hr1G013680.1 | No alias | histone *(H2B) | 0.03 | Orthogroups_2024-Update | |
HORVU3Hr1G086610.4 | No alias | histone *(H2B) | 0.04 | Orthogroups_2024-Update | |
HORVU4Hr1G009040.2 | No alias | histone *(H2B) | 0.04 | Orthogroups_2024-Update | |
HORVU5Hr1G094500.1 | No alias | histone *(H2B) | 0.02 | Orthogroups_2024-Update | |
HORVU6Hr1G005950.2 | No alias | histone *(H2B) | 0.03 | Orthogroups_2024-Update | |
HORVU7Hr1G110090.1 | No alias | histone *(H2B) | 0.03 | Orthogroups_2024-Update | |
HORVU7Hr1G110310.1 | No alias | histone *(H2B) | 0.04 | Orthogroups_2024-Update | |
LOC_Os01g05630 | No alias | Core histone H2A/H2B/H3/H4 domain containing protein,... | 0.02 | Orthogroups_2024-Update | |
LOC_Os01g05900 | No alias | Core histone H2A/H2B/H3/H4 domain containing protein,... | 0.03 | Orthogroups_2024-Update | |
MA_10434433g0010 | No alias | (at3g45980 : 175.0) Encodes a histone 2B (H2B) protein.... | 0.03 | Orthogroups_2024-Update | |
MA_8065g0010 | No alias | (at5g22880 : 173.0) Encodes a histone 2B (H2B) protein.... | 0.03 | Orthogroups_2024-Update | |
PSME_00000376-RA | No alias | (p54347|h2b4_chlre : 153.0) Histone H2B.4 (H2B-IV) -... | 0.06 | Orthogroups_2024-Update | |
Seita.2G294900.1 | No alias | histone *(H2B) | 0.03 | Orthogroups_2024-Update | |
Seita.5G107600.1 | No alias | histone *(H2B) | 0.05 | Orthogroups_2024-Update | |
Sobic.003G067300.1 | No alias | histone *(H2B) | 0.03 | Orthogroups_2024-Update | |
Sobic.003G067500.1 | No alias | histone *(H2B) | 0.02 | Orthogroups_2024-Update | |
Solyc05g055440 | No alias | Histone H2B (AHRD V3.3 *** K4C2M0_SOLLC) | 0.02 | Orthogroups_2024-Update | |
Solyc06g075800 | No alias | Histone H2B (AHRD V3.3 *** K4C9U5_SOLLC) | 0.02 | Orthogroups_2024-Update | |
Sopen06g031230 | No alias | Core histone H2A/H2B/H3/H4 | 0.02 | Orthogroups_2024-Update | |
Sopen06g032230 | No alias | Core histone H2A/H2B/H3/H4 | 0.02 | Orthogroups_2024-Update | |
Sopen12g006850 | No alias | Core histone H2A/H2B/H3/H4 | 0.02 | Orthogroups_2024-Update | |
evm.model.contig_498.4 | No alias | (p16868|h2b4_volca : 127.0) Histone H2B.4 (H2B-IV) -... | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000786 | nucleosome | IEA | InterProScan predictions |
MF | GO:0003677 | DNA binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | Predicted GO |
MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Predicted GO |
MF | GO:0004560 | alpha-L-fucosidase activity | IEP | Predicted GO |
MF | GO:0004672 | protein kinase activity | IEP | Predicted GO |
MF | GO:0004860 | protein kinase inhibitor activity | IEP | Predicted GO |
MF | GO:0004861 | cyclin-dependent protein serine/threonine kinase inhibitor activity | IEP | Predicted GO |
MF | GO:0005524 | ATP binding | IEP | Predicted GO |
CC | GO:0005634 | nucleus | IEP | Predicted GO |
BP | GO:0006325 | chromatin organization | IEP | Predicted GO |
BP | GO:0006334 | nucleosome assembly | IEP | Predicted GO |
BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Predicted GO |
BP | GO:0006464 | cellular protein modification process | IEP | Predicted GO |
BP | GO:0006468 | protein phosphorylation | IEP | Predicted GO |
BP | GO:0006793 | phosphorus metabolic process | IEP | Predicted GO |
BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0007050 | cell cycle arrest | IEP | Predicted GO |
BP | GO:0008037 | cell recognition | IEP | Predicted GO |
MF | GO:0008144 | drug binding | IEP | Predicted GO |
BP | GO:0008150 | biological_process | IEP | Predicted GO |
BP | GO:0009889 | regulation of biosynthetic process | IEP | Predicted GO |
BP | GO:0009987 | cellular process | IEP | Predicted GO |
BP | GO:0010468 | regulation of gene expression | IEP | Predicted GO |
BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Predicted GO |
MF | GO:0015928 | fucosidase activity | IEP | Predicted GO |
BP | GO:0016043 | cellular component organization | IEP | Predicted GO |
MF | GO:0016301 | kinase activity | IEP | Predicted GO |
BP | GO:0016310 | phosphorylation | IEP | Predicted GO |
MF | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity | IEP | Predicted GO |
MF | GO:0016740 | transferase activity | IEP | Predicted GO |
MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | Predicted GO |
MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | Predicted GO |
MF | GO:0017076 | purine nucleotide binding | IEP | Predicted GO |
MF | GO:0019207 | kinase regulator activity | IEP | Predicted GO |
MF | GO:0019210 | kinase inhibitor activity | IEP | Predicted GO |
BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0019222 | regulation of metabolic process | IEP | Predicted GO |
BP | GO:0019538 | protein metabolic process | IEP | Predicted GO |
MF | GO:0019887 | protein kinase regulator activity | IEP | Predicted GO |
BP | GO:0022402 | cell cycle process | IEP | Predicted GO |
BP | GO:0022414 | reproductive process | IEP | Predicted GO |
BP | GO:0022607 | cellular component assembly | IEP | Predicted GO |
MF | GO:0030246 | carbohydrate binding | IEP | Predicted GO |
MF | GO:0030291 | protein serine/threonine kinase inhibitor activity | IEP | Predicted GO |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Predicted GO |
BP | GO:0031323 | regulation of cellular metabolic process | IEP | Predicted GO |
BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Predicted GO |
MF | GO:0032553 | ribonucleotide binding | IEP | Predicted GO |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Predicted GO |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Predicted GO |
BP | GO:0034622 | cellular protein-containing complex assembly | IEP | Predicted GO |
BP | GO:0034728 | nucleosome organization | IEP | Predicted GO |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
MF | GO:0036094 | small molecule binding | IEP | Predicted GO |
BP | GO:0036211 | protein modification process | IEP | Predicted GO |
MF | GO:0043168 | anion binding | IEP | Predicted GO |
BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
CC | GO:0043227 | membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Predicted GO |
BP | GO:0043412 | macromolecule modification | IEP | Predicted GO |
MF | GO:0043565 | sequence-specific DNA binding | IEP | Predicted GO |
BP | GO:0043933 | protein-containing complex subunit organization | IEP | Predicted GO |
BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
BP | GO:0045786 | negative regulation of cell cycle | IEP | Predicted GO |
BP | GO:0048523 | negative regulation of cellular process | IEP | Predicted GO |
BP | GO:0048544 | recognition of pollen | IEP | Predicted GO |
BP | GO:0050789 | regulation of biological process | IEP | Predicted GO |
BP | GO:0050794 | regulation of cellular process | IEP | Predicted GO |
BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0051252 | regulation of RNA metabolic process | IEP | Predicted GO |
BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Predicted GO |
BP | GO:0065003 | protein-containing complex assembly | IEP | Predicted GO |
BP | GO:0065004 | protein-DNA complex assembly | IEP | Predicted GO |
BP | GO:0065007 | biological regulation | IEP | Predicted GO |
BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Predicted GO |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | Predicted GO |
BP | GO:0080090 | regulation of primary metabolic process | IEP | Predicted GO |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Predicted GO |
MF | GO:0140096 | catalytic activity, acting on a protein | IEP | Predicted GO |
MF | GO:0140110 | transcription regulator activity | IEP | Predicted GO |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Predicted GO |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Predicted GO |
BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR007125 | Histone_H2A/H2B/H3 | 5 | 98 |
No external refs found! |