- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : (at4g37170 : 449.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 43848 Blast hits to 14238 proteins in 253 species: Archae - 0; Bacteria - 12; Metazoa - 20; Fungi - 118; Plants - 43065; Viruses - 0; Other Eukaryotes - 633 (source: NCBI BLink). & (q76c99|rf1_orysa : 139.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 812.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_10428121g0010 | |
| Cluster | HCCA clusters: Cluster_7 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 124407 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi1g36900 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.05 | Orthogroups_2024-Update | |
| Bradi1g38705 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Bradi1g68870 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Bradi2g53377 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Bradi2g58450 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi4g22520 | No alias | mitochondrial editing factor 22 | 0.04 | Orthogroups_2024-Update | |
| Glyma.08G034600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.12G001100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.17G209700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
| HORVU7Hr1G030840.1 | No alias | RNA editing factor *(MEF29) | 0.04 | Orthogroups_2024-Update | |
| MA_136326g0010 | No alias | (at5g09950 : 662.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
| MA_42352g0010 | No alias | (at2g13600 : 487.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
| MA_4503g0010 | No alias | (at2g27610 : 599.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
| PSME_00001341-RA | No alias | (at1g20230 : 694.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
| PSME_00003011-RA | No alias | (at4g18750 : 444.0) Encodes a pentatricopeptide (PPR)... | 0.04 | Orthogroups_2024-Update | |
| PSME_00003567-RA | No alias | (at4g13650 : 593.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
| PSME_00003874-RA | No alias | (at4g33170 : 590.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
| PSME_00013106-RA | No alias | (at4g13650 : 681.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
| PSME_00017551-RA | No alias | (at4g18750 : 421.0) Encodes a pentatricopeptide (PPR)... | 0.05 | Orthogroups_2024-Update | |
| PSME_00045217-RA | No alias | (at4g18750 : 610.0) Encodes a pentatricopeptide (PPR)... | 0.04 | Orthogroups_2024-Update | |
| PSME_00052053-RA | No alias | (at1g11290 : 599.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
| Seita.4G100100.1 | No alias | Unknown function | 0.06 | Orthogroups_2024-Update | |
| Seita.9G007900.1 | No alias | Unknown function | 0.06 | Orthogroups_2024-Update | |
| Seita.9G489500.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Sobic.003G336400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Predicted GO |
| MF | GO:0005488 | binding | IEP | Predicted GO |
| BP | GO:0006886 | intracellular protein transport | IEP | Predicted GO |
| BP | GO:0006996 | organelle organization | IEP | Predicted GO |
| BP | GO:0007010 | cytoskeleton organization | IEP | Predicted GO |
| MF | GO:0008017 | microtubule binding | IEP | Predicted GO |
| MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
| MF | GO:0015631 | tubulin binding | IEP | Predicted GO |
| CC | GO:0030117 | membrane coat | IEP | Predicted GO |
| MF | GO:0043167 | ion binding | IEP | Predicted GO |
| MF | GO:0043169 | cation binding | IEP | Predicted GO |
| MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
| MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 212 | 238 |
| IPR002885 | Pentatricopeptide_repeat | 80 | 107 |
| IPR002885 | Pentatricopeptide_repeat | 444 | 468 |
| IPR002885 | Pentatricopeptide_repeat | 344 | 366 |
| IPR002885 | Pentatricopeptide_repeat | 109 | 131 |
| IPR002885 | Pentatricopeptide_repeat | 269 | 316 |
| IPR002885 | Pentatricopeptide_repeat | 369 | 418 |
| IPR002885 | Pentatricopeptide_repeat | 137 | 184 |
| No external refs found! |