Description : (at1g13260 : 267.0) Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a negative growth regulator.; related to ABI3/VP1 1 (RAV1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Transcriptional factor B3 (InterPro:IPR003340), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene response DNA binding factor 3 (TAIR:AT3G25730.1); Has 6277 Blast hits to 6015 proteins in 258 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 6251; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). & (gnl|cdd|68872 : 112.0) no description available & (reliability: 534.0) & (original description: no original description)
Gene families : OG_42_0000305 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000305_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_10428163g0010 | |
Cluster | HCCA clusters: Cluster_122 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
A4A49_27413 | No alias | ap2erf and b3 domain-containing transcription factor rav1 | 0.03 | Orthogroups_2024-Update | |
At1g68840 | No alias | TEM2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNP0] | 0.03 | Orthogroups_2024-Update | |
Brara.E00098.1 | No alias | RAV/NGATHA-type transcription factor | 0.03 | Orthogroups_2024-Update | |
Brara.H03121.1 | No alias | RAV/NGATHA-type transcription factor | 0.03 | Orthogroups_2024-Update | |
Brara.I03099.1 | No alias | RAV/NGATHA-type transcription factor & AP2-RAV-type... | 0.03 | Orthogroups_2024-Update | |
Glyma.01G087500 | No alias | AP2/B3 transcription factor family protein | 0.04 | Orthogroups_2024-Update | |
Glyma.02G099500 | No alias | AP2/B3 transcription factor family protein | 0.03 | Orthogroups_2024-Update | |
Glyma.10G204400 | No alias | AP2/B3 transcription factor family protein | 0.04 | Orthogroups_2024-Update | |
HORVU3Hr1G010100.2 | No alias | RAV/NGATHA-type transcription factor & AP2-RAV-type... | 0.04 | Orthogroups_2024-Update | |
HORVU3Hr1G010190.5 | No alias | RAV/NGATHA-type transcription factor & AP2-RAV-type... | 0.03 | Orthogroups_2024-Update | |
HORVU3Hr1G064640.4 | No alias | RAV/NGATHA-type transcription factor & AP2-RAV-type... | 0.03 | Orthogroups_2024-Update | |
HORVU5Hr1G040620.2 | No alias | RAV/NGATHA-type transcription factor | 0.01 | Orthogroups_2024-Update | |
LOC_Os01g04750 | No alias | B3 DNA binding domain containing protein, expressed | 0.03 | Orthogroups_2024-Update | |
LOC_Os10g39190 | No alias | B3 DNA binding domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
MA_246350g0010 | No alias | (at1g13260 : 168.0) Encodes an AP2/B3 domain... | 0.03 | Orthogroups_2024-Update | |
PSME_00035556-RA | No alias | (at3g25730 : 293.0) ethylene response DNA binding factor... | 0.04 | Orthogroups_2024-Update | |
Potri.016G074500 | No alias | AP2/B3-like transcriptional factor family protein | 0.03 | Orthogroups_2024-Update | |
Seita.1G273900.1 | No alias | RAV/NGATHA-type transcription factor | 0.02 | Orthogroups_2024-Update | |
Sobic.003G265200.1 | No alias | RAV/NGATHA-type transcription factor & AP2-RAV-type... | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | InterProScan predictions |
MF | GO:0003700 | DNA-binding transcription factor activity | IEA | InterProScan predictions |
BP | GO:0006355 | regulation of transcription, DNA-templated | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005507 | copper ion binding | IEP | Predicted GO |
BP | GO:0006808 | regulation of nitrogen utilization | IEP | Predicted GO |
BP | GO:0017003 | protein-heme linkage | IEP | Predicted GO |
BP | GO:0017004 | cytochrome complex assembly | IEP | Predicted GO |
BP | GO:0017006 | protein-tetrapyrrole linkage | IEP | Predicted GO |
No external refs found! |