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  5. MA_10428421g0010

MA_10428421g0010


Description : (at4g02750 : 749.0) Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09410.1); Has 56089 Blast hits to 14902 proteins in 275 species: Archae - 0; Bacteria - 15; Metazoa - 173; Fungi - 123; Plants - 55165; Viruses - 0; Other Eukaryotes - 613 (source: NCBI BLink). & (q76c99|rf1_orysa : 147.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1498.0) & (original description: no original description)


Gene families : OG_42_0008601 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008601_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_10428421g0010
Cluster HCCA clusters: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
Bradi1g51400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Brara.E00931.1 No alias RNA editing factor *(COD1) 0.03 Orthogroups_2024-Update
HORVU5Hr1G011920.1 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os11g24530 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
Seita.4G027600.1 No alias RNA editing factor *(COD1) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 559 683
IPR002885 Pentatricopeptide_repeat 461 482
IPR002885 Pentatricopeptide_repeat 527 555
IPR002885 Pentatricopeptide_repeat 70 100
IPR002885 Pentatricopeptide_repeat 194 224
IPR002885 Pentatricopeptide_repeat 360 385
IPR002885 Pentatricopeptide_repeat 40 68
IPR002885 Pentatricopeptide_repeat 225 254
IPR002885 Pentatricopeptide_repeat 101 131
IPR002885 Pentatricopeptide_repeat 284 331
IPR002885 Pentatricopeptide_repeat 386 433
IPR002885 Pentatricopeptide_repeat 160 192
No external refs found!