MA_10428446g0010

Description : (at4g08150 : 291.0) A member of class I knotted1-like homeobox gene family (together with KNAT2). Similar to the knotted1 (kn1) homeobox gene of maize. Normally expressed in the peripheral and rib zone of shoot apical meristem but not in the leaf primordia. It is also expressed in the fourth floral whorl, in the region that would become style, particularly in the cell surrounding the transmitting tissue. No expression was detected in the first three floral whorls. Expression is repressed by auxin and AS1 which results in the promotion of leaf fate.; KNOTTED-like from Arabidopsis thaliana (KNAT1); CONTAINS InterPro DOMAIN/s: KNOX2 (InterPro:IPR005541), ELK (InterPro:IPR005539), Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), KNOX1 (InterPro:IPR005540), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNOX/ELK homeobox transcription factor (TAIR:AT1G62360.1); Has 31270 Blast hits to 14770 proteins in 476 species: Archae - 4; Bacteria - 107; Metazoa - 2529; Fungi - 972; Plants - 3913; Viruses - 2; Other Eukaryotes - 23743 (source: NCBI BLink). & (p46608|hsbh1_soybn : 273.0) Homeobox protein SBH1 - Glycine max (Soybean) & (reliability: 582.0) & (original description: no original description)

Gene families : OG_42_0000234 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000234_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Picea release: MA_10428446g0010
Cluster	HCCA clusters: Cluster_189

Target	Alias	Description	ECC score	Gene Family Method
A4A49_16490	No alias	homeobox protein knotted-1-like 1	0.03	Orthogroups_2024-Update
At1g62990	No alias	Homeobox protein knotted-1-like 7...	0.03	Orthogroups_2024-Update
Brara.C00448.1	No alias	KNOX-type transcription factor	0.02	Orthogroups_2024-Update
Brara.F02723.1	No alias	KNOX-type transcription factor	0.03	Orthogroups_2024-Update
Brara.K00379.1	No alias	KNOX-type transcription factor	0.03	Orthogroups_2024-Update
Glyma.10G147000	No alias	KNOTTED1-like homeobox gene 6	0.03	Orthogroups_2024-Update
Glyma.15G257800	No alias	KNOTTED1-like homeobox gene 6	0.03	Orthogroups_2024-Update
HORVU5Hr1G098570.6	No alias	KNOX-type transcription factor	0.03	Orthogroups_2024-Update
PSME_00033425-RA	No alias	(o04135\|knap2_maldo : 176.0) Homeobox protein...	0.04	Orthogroups_2024-Update
PSME_00035381-RA	No alias	(p46609\|osh1_orysa : 118.0) Homeobox protein OSH1 -...	0.03	Orthogroups_2024-Update
Seita.1G060600.1	No alias	KNOX-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.001G106200.1	No alias	KNOX-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.003G144200.1	No alias	KNOX-type transcription factor	0.04	Orthogroups_2024-Update
Solyc05g005090	No alias	Knotted-1 homeobox protein (AHRD V3.3 *** R9R650_9FABA)	0.04	Orthogroups_2024-Update
Sopen08g012000	No alias	KNOX2 domain	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0009308	amine metabolic process	IEP	Predicted GO
BP	GO:0009690	cytokinin metabolic process	IEP	Predicted GO
BP	GO:0010817	regulation of hormone levels	IEP	Predicted GO
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	Predicted GO
MF	GO:0019139	cytokinin dehydrogenase activity	IEP	Predicted GO
BP	GO:0034754	cellular hormone metabolic process	IEP	Predicted GO
BP	GO:0042445	hormone metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR005541	KNOX2	229	276
IPR005539	ELK_dom	321	342
IPR008422	Homeobox_KN_domain	361	400
IPR005540	KNOX1	178	220

External Links

No external refs found!

MA_10428446g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation