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  5. MA_10428487g0010

MA_10428487g0010


Description : (at2g37270 : 350.0) One of two genes encoding the ribosomal protein S5. Expressed at a lower level compared to ATRPS5A.; ribosomal protein 5B (RPS5B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: fruit, cultured cell, pollen tube, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ribosomal protein S7, conserved site (InterPro:IPR020606), Ribosomal protein S7, eukaryotic/archaeal (InterPro:IPR005716), Ribosomal protein S7 (InterPro:IPR000235); BEST Arabidopsis thaliana protein match is: ribosomal protein 5A (TAIR:AT3G11940.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (o65731|rs5_cicar : 347.0) 40S ribosomal protein S5 (Fragment) - Cicer arietinum (Chickpea) (Garbanzo) & (reliability: 700.0) & (original description: no original description)


Gene families : OG_42_0002111 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002111_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_10428487g0010
Cluster HCCA clusters: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
164593 No alias ribosomal protein 5A 0.08 Orthogroups_2024-Update
271466 No alias ribosomal protein 5B 0.03 Orthogroups_2024-Update
Bradi2g03760 No alias ribosomal protein 5A 0.05 Orthogroups_2024-Update
Bradi4g41050 No alias ribosomal protein 5B 0.05 Orthogroups_2024-Update
Brara.A03377.1 No alias component *(uS7) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
Brara.C01872.1 No alias component *(uS7) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Brara.C03392.1 No alias component *(uS7) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Brara.D02263.1 No alias component *(uS7) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Brara.E00779.1 No alias component *(uS7) of small ribosomal-subunit (SSU) proteome 0.11 Orthogroups_2024-Update
Brara.E02892.1 No alias component *(uS7) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Cre06.g290950 No alias ribosomal protein 5B 0.11 Orthogroups_2024-Update
GRMZM2G078985 No alias ribosomal protein 5A 0.05 Orthogroups_2024-Update
Glyma.02G167900 No alias ribosomal protein 5B 0.04 Orthogroups_2024-Update
Glyma.09G103400 No alias ribosomal protein 5B 0.09 Orthogroups_2024-Update
Glyma.12G201900 No alias ribosomal protein 5B 0.06 Orthogroups_2024-Update
HORVU3Hr1G015190.2 No alias component *(uS7) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Kfl00737_0010 kfl00737_0010_v1.1 (o65731|rs5_cicar : 338.0) 40S ribosomal protein S5... 0.08 Orthogroups_2024-Update
Mp3g10570.1 No alias component RPS5 of SSU proteome 0.06 Orthogroups_2024-Update
Potri.006G197700 No alias ribosomal protein 5B 0.03 Orthogroups_2024-Update
Pp1s10_385V6 No alias 40s ribosomal protein s5 0.13 Orthogroups_2024-Update
Pp1s114_143V6 No alias 40s ribosomal protein s5 0.02 Orthogroups_2024-Update
Pp1s400_33V6 No alias 40s ribosomal protein s5 0.03 Orthogroups_2024-Update
Seita.5G065000.1 No alias component *(uS7) of small ribosomal-subunit (SSU) proteome 0.13 Orthogroups_2024-Update
Seita.8G114300.1 No alias component *(uS7) of small ribosomal-subunit (SSU) proteome 0.08 Orthogroups_2024-Update
Sobic.003G109600.2 No alias component *(uS7) of small ribosomal-subunit (SSU) proteome 0.13 Orthogroups_2024-Update
Solyc10g078620 No alias Ribosomal protein S5/S7 (AHRD V3.3 *** A0A103XH68_CYNCS) 0.1 Orthogroups_2024-Update
Solyc11g042610 No alias Ribosomal protein S5/S7 (AHRD V3.3 *** A0A103XH68_CYNCS) 0.05 Orthogroups_2024-Update
Sopen10g029250 No alias Ribosomal protein S7p/S5e 0.08 Orthogroups_2024-Update
Sopen11g018760 No alias Ribosomal protein S7p/S5e 0.03 Orthogroups_2024-Update
evm.model.contig_670.1 No alias (o65731|rs5_cicar : 298.0) 40S ribosomal protein S5... 0.09 Orthogroups_2024-Update
evm.model.tig00021332.10 No alias (o65731|rs5_cicar : 303.0) 40S ribosomal protein S5... 0.09 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004017 adenylate kinase activity IEP Predicted GO
MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO
MF GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
CC GO:0005743 mitochondrial inner membrane IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006091 generation of precursor metabolites and energy IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
CC GO:0008250 oligosaccharyltransferase complex IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
CC GO:0016272 prefoldin complex IEP Predicted GO
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Predicted GO
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0019866 organelle inner membrane IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
BP GO:0022900 electron transport chain IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
MF GO:0050145 nucleoside monophosphate kinase activity IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
CC GO:0070469 respiratory chain IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR023798 Ribosomal_S7_dom 68 213
No external refs found!