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  5. Solyc10g008580

Solyc10g008580


Description : F-box family protein (AHRD V3.3 *** S1SIA6_THECC)


Gene families : OG_42_0000102 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc10g008580
Cluster HCCA clusters: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
Glyma.10G220500 No alias F-box family protein 0.03 Orthogroups_2024-Update
Potri.T088200 No alias F-box associated ubiquitination effector family protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEP Predicted GO
CC GO:0005811 lipid droplet IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
CC GO:0012511 monolayer-surrounded lipid storage body IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR006527 F-box-assoc_dom_typ1 217 317
IPR001810 F-box_dom 11 46
No external refs found!