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Description : (at1g09910 : 290.0) Rhamnogalacturonate lyase family protein; FUNCTIONS IN: lyase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT1G09890.1); Has 300 Blast hits to 279 proteins in 59 species: Archae - 0; Bacteria - 45; Metazoa - 0; Fungi - 84; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 580.0) & (original description: no original description)
Gene families : OG_42_0000589 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000589_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_10429122g0010 | |
| Cluster | HCCA clusters: Cluster_28 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Glyma.04G091066 | No alias | Rhamnogalacturonate lyase family protein | 0.03 | Orthogroups_2024-Update | |
| LOC_Os08g44020 | No alias | rhamnogalacturonate lyase, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| Seita.8G003600.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Solyc04g014450 | No alias | No description available | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000145 | exocyst | IEP | Predicted GO |
| BP | GO:0006887 | exocytosis | IEP | Predicted GO |
| BP | GO:0032940 | secretion by cell | IEP | Predicted GO |
| CC | GO:0044448 | cell cortex part | IEP | Predicted GO |
| BP | GO:0046903 | secretion | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR010325 | Rhamnogal_lyase | 11 | 192 |
| No external refs found! |