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  5. MA_10429462g0020

MA_10429462g0020


Description : (at1g12775 : 293.0) Pentatricopeptide repeat (PPR) superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G12300.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q76c99|rf1_orysa : 266.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 580.0) & (original description: no original description)


Gene families : OG_42_0001457 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001457_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_10429462g0020
Cluster HCCA clusters: Cluster_272

Target Alias Description ECC score Gene Family Method Actions
94034 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi1g33360 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
HORVU7Hr1G099910.4 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os06g47570 No alias PPR repeat containing protein, expressed 0.02 Orthogroups_2024-Update
MA_9353022g0010 No alias (at5g65560 : 557.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_96139g0010 No alias (at5g65560 : 494.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00021435-RA No alias (at5g65560 : 616.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00041300-RA No alias (at5g65560 : 628.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
Seita.4G252800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.010G240700.1 No alias Unknown function 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005759 mitochondrial matrix IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 18 67
IPR002885 Pentatricopeptide_repeat 193 241
IPR002885 Pentatricopeptide_repeat 124 172
IPR002885 Pentatricopeptide_repeat 263 312
IPR002885 Pentatricopeptide_repeat 330 362
IPR002885 Pentatricopeptide_repeat 85 117
No external refs found!