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  5. MA_10430060g0020

MA_10430060g0020


Description : (at5g06210 : 98.2) RNA binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 5 (TAIR:AT1G74230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 196.4) & (original description: no original description)


Gene families : OG_42_0000107 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_10430060g0020
Cluster HCCA clusters: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
A4A49_27721 No alias glycine-rich rna-binding protein 0.03 Orthogroups_2024-Update
A4A49_55770 No alias glycine-rich rna-binding protein 0.03 Orthogroups_2024-Update
At2g27330 No alias At2g27330 [Source:UniProtKB/TrEMBL;Acc:Q1ECN0] 0.03 Orthogroups_2024-Update
Bradi1g12460 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.03 Orthogroups_2024-Update
Brara.B00201.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.E00758.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.G00334.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.15G040500 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
HORVU5Hr1G110370.1 No alias RNA editing factor *(ORRM3) 0.02 Orthogroups_2024-Update
LOC_Os03g46770 No alias RNA recognition motif containing protein, expressed 0.04 Orthogroups_2024-Update
LOC_Os12g43600 No alias RNA recognition motif containing protein, expressed 0.03 Orthogroups_2024-Update
MA_28218g0010 No alias (at5g61030 : 138.0) encodes a glycine-rich RNA binding... 0.02 Orthogroups_2024-Update
Sopen10g023060 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.04 Orthogroups_2024-Update
Sopen10g023080 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.03 Orthogroups_2024-Update
evm.model.contig_2015.16 No alias (q08937|roc2_nicsy : 89.4) 29 kDa ribonucleoprotein B,... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0005199 structural constituent of cell wall IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
BP GO:0009664 plant-type cell wall organization IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 32 100
No external refs found!