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Description : (at1g55250 : 465.0) Encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B.; histone mono-ubiquitination 2 (HUB2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: histone mono-ubiquitination 1 (TAIR:AT2G44950.1). & (reliability: 930.0) & (original description: no original description)
Gene families : OG_42_0001988 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001988_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_10430809g0020 | |
| Cluster | HCCA clusters: Cluster_109 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Bradi2g33230 | No alias | histone mono-ubiquitination 2 | 0.02 | Orthogroups_2024-Update | |
| GRMZM2G341271 | No alias | histone mono-ubiquitination 2 | 0.02 | Orthogroups_2024-Update | |
| Glyma.11G175700 | No alias | histone mono-ubiquitination 1 | 0.03 | Orthogroups_2024-Update | |
| LOC_Os10g41590 | No alias | zinc finger, C3HC4 type domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
| evm.model.tig00000169.18 | No alias | (at1g55250 : 113.0) Encodes one of two orthologous E3... | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0002097 | tRNA wobble base modification | IEP | Predicted GO |
| BP | GO:0002100 | tRNA wobble adenosine to inosine editing | IEP | Predicted GO |
| MF | GO:0003682 | chromatin binding | IEP | Predicted GO |
| MF | GO:0004000 | adenosine deaminase activity | IEP | Predicted GO |
| MF | GO:0005047 | signal recognition particle binding | IEP | Predicted GO |
| MF | GO:0005543 | phospholipid binding | IEP | Predicted GO |
| CC | GO:0005785 | signal recognition particle receptor complex | IEP | Predicted GO |
| BP | GO:0006338 | chromatin remodeling | IEP | Predicted GO |
| BP | GO:0006382 | adenosine to inosine editing | IEP | Predicted GO |
| BP | GO:0006400 | tRNA modification | IEP | Predicted GO |
| BP | GO:0008033 | tRNA processing | IEP | Predicted GO |
| MF | GO:0008251 | tRNA-specific adenosine deaminase activity | IEP | Predicted GO |
| MF | GO:0008378 | galactosyltransferase activity | IEP | Predicted GO |
| BP | GO:0009451 | RNA modification | IEP | Predicted GO |
| BP | GO:0015985 | energy coupled proton transport, down electrochemical gradient | IEP | Predicted GO |
| BP | GO:0015986 | ATP synthesis coupled proton transport | IEP | Predicted GO |
| BP | GO:0016553 | base conversion or substitution editing | IEP | Predicted GO |
| MF | GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | IEP | Predicted GO |
| MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | Predicted GO |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Predicted GO |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Predicted GO |
| MF | GO:0019239 | deaminase activity | IEP | Predicted GO |
| MF | GO:0019829 | cation-transporting ATPase activity | IEP | Predicted GO |
| BP | GO:0019915 | lipid storage | IEP | Predicted GO |
| MF | GO:0022853 | active ion transmembrane transporter activity | IEP | Predicted GO |
| CC | GO:0033178 | proton-transporting two-sector ATPase complex, catalytic domain | IEP | Predicted GO |
| BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
| MF | GO:0035091 | phosphatidylinositol binding | IEP | Predicted GO |
| MF | GO:0042625 | ATPase coupled ion transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0043021 | ribonucleoprotein complex binding | IEP | Predicted GO |
| CC | GO:0044432 | endoplasmic reticulum part | IEP | Predicted GO |
| MF | GO:0044769 | ATPase activity, coupled to transmembrane movement of ions, rotational mechanism | IEP | Predicted GO |
| MF | GO:0044877 | protein-containing complex binding | IEP | Predicted GO |
| CC | GO:0045261 | proton-transporting ATP synthase complex, catalytic core F(1) | IEP | Predicted GO |
| MF | GO:0046933 | proton-transporting ATP synthase activity, rotational mechanism | IEP | Predicted GO |
| BP | GO:0051235 | maintenance of location | IEP | Predicted GO |
| CC | GO:0098796 | membrane protein complex | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |