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  5. MA_10432704g0020

MA_10432704g0020


Description : (at4g18750 : 463.0) Encodes a pentatricopeptide (PPR) protein involved in leaf and root development. dot4 mutants have an aberrant midgap venation pattern in juvenile leaves and cotyledons.; DEFECTIVELY ORGANIZED TRIBUTARIES 4 (DOT4); INVOLVED IN: cotyledon vascular tissue pattern formation, phloem or xylem histogenesis, leaf vascular tissue pattern formation, leaf development; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G16860.1); Has 49728 Blast hits to 14531 proteins in 279 species: Archae - 0; Bacteria - 13; Metazoa - 210; Fungi - 140; Plants - 48642; Viruses - 0; Other Eukaryotes - 723 (source: NCBI BLink). & (q76c99|rf1_orysa : 144.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 926.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_10432704g0020
Cluster HCCA clusters: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
111767 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
A4A49_21718 No alias pentatricopeptide repeat-containing protein 0.03 Orthogroups_2024-Update
At1g03540 No alias Pentatricopeptide repeat-containing protein At1g03540... 0.03 Orthogroups_2024-Update
At1g06140 No alias Pentatricopeptide repeat-containing protein At1g06140,... 0.03 Orthogroups_2024-Update
At1g25360 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.03 Orthogroups_2024-Update
At3g20730 No alias Pentatricopeptide repeat-containing protein At3g20730... 0.03 Orthogroups_2024-Update
At4g14820 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.03 Orthogroups_2024-Update
At5g03800 No alias Glycosyltransferase (Fragment)... 0.04 Orthogroups_2024-Update
Glyma.01G173200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.04G203500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G208902 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
PSME_00015055-RA No alias (at1g11290 : 619.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
Potri.018G147900 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Sobic.006G275900.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 216 263
IPR002885 Pentatricopeptide_repeat 113 162
IPR002885 Pentatricopeptide_repeat 484 532
IPR002885 Pentatricopeptide_repeat 348 384
IPR002885 Pentatricopeptide_repeat 287 312
IPR002885 Pentatricopeptide_repeat 315 345
IPR002885 Pentatricopeptide_repeat 560 584
No external refs found!