MA_10432758g0010

Description : (p35684|rl3_orysj : 667.0) 60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2 & (at1g43170 : 656.0) Encodes a cytoplasmic ribosomal protein.; ribosomal protein 1 (RP1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L3 (InterPro:IPR000597), Ribosomal protein L3, conserved site (InterPro:IPR019926), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: R-protein L3 B (TAIR:AT1G61580.1). & (reliability: 1312.0) & (original description: no original description)

Gene families : OG_42_0002422 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002422_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Picea release: MA_10432758g0010
Cluster	HCCA clusters: Cluster_166

Target	Alias	Description	ECC score	Gene Family Method
270706	No alias	ribosomal protein 1	0.07	Orthogroups_2024-Update
Bradi4g24610	No alias	ribosomal protein 1	0.1	Orthogroups_2024-Update
Bradi4g41680	No alias	ribosomal protein 1	0.05	Orthogroups_2024-Update
Brara.B02465.1	No alias	component *(uL3) of large ribosomal-subunit (LSU) proteome	0.13	Orthogroups_2024-Update
Brara.I01735.1	No alias	component *(uL3) of large ribosomal-subunit (LSU) proteome	0.11	Orthogroups_2024-Update
GRMZM2G109677	No alias	ribosomal protein 1	0.04	Orthogroups_2024-Update
Glyma.09G000700	No alias	ribosomal protein 1	0.03	Orthogroups_2024-Update
Glyma.20G168100	No alias	ribosomal protein 1	0.04	Orthogroups_2024-Update
HORVU4Hr1G019980.1	No alias	component *(uL3) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Kfl01033_0020	kfl01033_0020_v1.1	(at1g61580 : 584.0) R-protein L3 B (RPL3B); FUNCTIONS...	0.04	Orthogroups_2024-Update
Mp1g18990.1	No alias	component RPL3 of LSU proteome component	0.03	Orthogroups_2024-Update
PSME_00045974-RA	No alias	(p35684\|rl3_orysj : 681.0) 60S ribosomal protein L3...	0.06	Orthogroups_2024-Update
PSME_00049106-RA	No alias	(p35684\|rl3_orysj : 665.0) 60S ribosomal protein L3...	0.04	Orthogroups_2024-Update
Potri.002G066200	No alias	ribosomal protein 1	0.03	Orthogroups_2024-Update
Potri.005G194500	No alias	ribosomal protein 1	0.05	Orthogroups_2024-Update
Pp1s154_134V6	No alias	ribosomal protein l3	0.02	Orthogroups_2024-Update
Pp1s330_36V6	No alias	ribosomal protein l3	0.09	Orthogroups_2024-Update
Seita.7G290900.1	No alias	component *(uL3) of large ribosomal-subunit (LSU) proteome	0.09	Orthogroups_2024-Update
Seita.8G046000.1	No alias	component *(uL3) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Sobic.005G050500.1	No alias	component *(uL3) of large ribosomal-subunit (LSU) proteome	0.1	Orthogroups_2024-Update
Sobic.006G216600.1	No alias	component *(uL3) of large ribosomal-subunit (LSU) proteome	0.09	Orthogroups_2024-Update
Solyc01g104590	No alias	ribosomal protein L3	0.11	Orthogroups_2024-Update
Sopen01g045870	No alias	Ribosomal protein L3	0.04	Orthogroups_2024-Update
Sopen01g047100	No alias	Ribosomal protein L3	0.08	Orthogroups_2024-Update
evm.model.contig_2059.33	No alias	(at1g61580 : 514.0) R-protein L3 B (RPL3B); FUNCTIONS...	0.03	Orthogroups_2024-Update
evm.model.tig00000025.50	No alias	(p35684\|rl3_orysj : 551.0) 60S ribosomal protein L3...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
CC	GO:0005742	mitochondrial outer membrane translocase complex	IEP	Predicted GO
BP	GO:0006275	regulation of DNA replication	IEP	Predicted GO
BP	GO:0006839	mitochondrial transport	IEP	Predicted GO
BP	GO:0017038	protein import	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
BP	GO:0030150	protein import into mitochondrial matrix	IEP	Predicted GO
BP	GO:0033365	protein localization to organelle	IEP	Predicted GO
BP	GO:0034613	cellular protein localization	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
CC	GO:0044429	mitochondrial part	IEP	Predicted GO
CC	GO:0044455	mitochondrial membrane part	IEP	Predicted GO
BP	GO:0044743	protein transmembrane import into intracellular organelle	IEP	Predicted GO
BP	GO:0051052	regulation of DNA metabolic process	IEP	Predicted GO
MF	GO:0051287	NAD binding	IEP	Predicted GO
BP	GO:0065002	intracellular protein transmembrane transport	IEP	Predicted GO
BP	GO:0070585	protein localization to mitochondrion	IEP	Predicted GO
BP	GO:0070727	cellular macromolecule localization	IEP	Predicted GO
BP	GO:0071806	protein transmembrane transport	IEP	Predicted GO
BP	GO:0072594	establishment of protein localization to organelle	IEP	Predicted GO
BP	GO:0072655	establishment of protein localization to mitochondrion	IEP	Predicted GO
CC	GO:0098798	mitochondrial protein complex	IEP	Predicted GO
CC	GO:0098799	outer mitochondrial membrane protein complex	IEP	Predicted GO
BP	GO:1990542	mitochondrial transmembrane transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000597	Ribosomal_L3	1	370

External Links

No external refs found!

MA_10432758g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation