Description : (at4g13650 : 679.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G16480.1); Has 61118 Blast hits to 14026 proteins in 284 species: Archae - 2; Bacteria - 18; Metazoa - 154; Fungi - 167; Plants - 59907; Viruses - 0; Other Eukaryotes - 870 (source: NCBI BLink). & (q76c99|rf1_orysa : 122.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1358.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_10433543g0010 | |
Cluster | HCCA clusters: Cluster_177 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
81625 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
A4A49_18851 | No alias | pentatricopeptide repeat-containing protein | 0.02 | Orthogroups_2024-Update | |
At5g66520 | No alias | Pentatricopeptide repeat-containing protein At5g66520... | 0.02 | Orthogroups_2024-Update | |
Bradi1g59070 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | Orthogroups_2024-Update | |
Bradi5g27691 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.02G227300 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.18G288100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
LOC_Os09g38310 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
PSME_00001719-RA | No alias | (at4g18750 : 701.0) Encodes a pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00006107-RA | No alias | (at1g11290 : 668.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
PSME_00036492-RA | No alias | (at2g22070 : 524.0) pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
Potri.003G088600 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.04 | Orthogroups_2024-Update | |
Potri.013G089400 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.014G097000 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.03 | Orthogroups_2024-Update | |
Sobic.002G007000.2 | No alias | RNA editing factor *(ELI1) | 0.02 | Orthogroups_2024-Update | |
Sobic.003G223000.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.009G250700.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.010G153600.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sopen01g039430 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005085 | guanyl-nucleotide exchange factor activity | IEP | Predicted GO |
MF | GO:0005088 | Ras guanyl-nucleotide exchange factor activity | IEP | Predicted GO |
MF | GO:0005089 | Rho guanyl-nucleotide exchange factor activity | IEP | Predicted GO |
MF | GO:0008897 | holo-[acyl-carrier-protein] synthase activity | IEP | Predicted GO |
MF | GO:0016780 | phosphotransferase activity, for other substituted phosphate groups | IEP | Predicted GO |
MF | GO:0017016 | Ras GTPase binding | IEP | Predicted GO |
MF | GO:0017048 | Rho GTPase binding | IEP | Predicted GO |
MF | GO:0019899 | enzyme binding | IEP | Predicted GO |
MF | GO:0031267 | small GTPase binding | IEP | Predicted GO |
MF | GO:0051020 | GTPase binding | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR032867 | DYW_dom | 1027 | 1151 |
IPR002885 | Pentatricopeptide_repeat | 854 | 901 |
IPR002885 | Pentatricopeptide_repeat | 652 | 699 |
IPR002885 | Pentatricopeptide_repeat | 347 | 394 |
IPR002885 | Pentatricopeptide_repeat | 448 | 496 |
IPR002885 | Pentatricopeptide_repeat | 753 | 798 |
IPR002885 | Pentatricopeptide_repeat | 553 | 580 |
IPR002885 | Pentatricopeptide_repeat | 422 | 447 |
IPR002885 | Pentatricopeptide_repeat | 828 | 852 |
IPR002885 | Pentatricopeptide_repeat | 929 | 952 |
IPR002885 | Pentatricopeptide_repeat | 287 | 315 |
No external refs found! |