1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc10g017590

Solyc10g017590


Description : LOW QUALITY:Calcium-dependent lipid-binding (CaLB domain) family protein (AHRD V3.3 *** AT3G61050.2)


Gene families : OG_42_0000345 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000345_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc10g017590
Cluster HCCA clusters: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
A4A49_56428 No alias synaptotagmin-4 0.03 Orthogroups_2024-Update
Bradi1g33150 No alias Calcium-dependent lipid-binding (CaLB domain) family protein 0.02 Orthogroups_2024-Update
Brara.B00393.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.G01905.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.14G220000 No alias Calcium-dependent lipid-binding (CaLB domain) family protein 0.04 Orthogroups_2024-Update
HORVU4Hr1G062820.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os02g25060 No alias NTMC2Type1.2 protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g14700 No alias C2 domain containing protein, expressed 0.02 Orthogroups_2024-Update
Potri.002G019800 No alias Calcium-dependent lipid-binding (CaLB domain) family protein 0.04 Orthogroups_2024-Update
Seita.9G467900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G435300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.010G236100.1 No alias membrane tethering protein (SYT1) of... 0.02 Orthogroups_2024-Update
Sopen12g004680 No alias C2 domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0008289 lipid binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
CC GO:0000930 gamma-tubulin complex IEP Predicted GO
CC GO:0000931 gamma-tubulin large complex IEP Predicted GO
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0005199 structural constituent of cell wall IEP Predicted GO
MF GO:0005244 voltage-gated ion channel activity IEP Predicted GO
MF GO:0005247 voltage-gated chloride channel activity IEP Predicted GO
MF GO:0005253 anion channel activity IEP Predicted GO
MF GO:0005254 chloride channel activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
BP GO:0005996 monosaccharide metabolic process IEP Predicted GO
BP GO:0006013 mannose metabolic process IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006821 chloride transport IEP Predicted GO
BP GO:0006904 vesicle docking involved in exocytosis IEP Predicted GO
MF GO:0008131 primary amine oxidase activity IEP Predicted GO
CC GO:0008274 gamma-tubulin ring complex IEP Predicted GO
MF GO:0008308 voltage-gated anion channel activity IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
BP GO:0009664 plant-type cell wall organization IEP Predicted GO
MF GO:0015108 chloride transmembrane transporter activity IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
BP GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient IEP Predicted GO
BP GO:0015991 ATP hydrolysis coupled proton transport IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
BP GO:0022406 membrane docking IEP Predicted GO
MF GO:0022832 voltage-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0030570 pectate lyase activity IEP Predicted GO
BP GO:0031503 protein-containing complex localization IEP Predicted GO
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Predicted GO
CC GO:0033180 proton-transporting V-type ATPase, V1 domain IEP Predicted GO
BP GO:0033566 gamma-tubulin complex localization IEP Predicted GO
BP GO:0034629 cellular protein-containing complex localization IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
CC GO:0044450 microtubule organizing center part IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
MF GO:0048038 quinone binding IEP Predicted GO
BP GO:0048278 vesicle docking IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0090662 ATP hydrolysis coupled transmembrane transport IEP Predicted GO
BP GO:0099131 ATP hydrolysis coupled ion transmembrane transport IEP Predicted GO
BP GO:0099132 ATP hydrolysis coupled cation transmembrane transport IEP Predicted GO
BP GO:0140029 exocytic process IEP Predicted GO
BP GO:0140056 organelle localization by membrane tethering IEP Predicted GO
InterPro domains Description Start Stop
IPR000008 C2_dom 246 342
IPR031468 SMP_LBD 51 230
No external refs found!