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Description : MADS-box transcription factor (AHRD V3.3 *** Q1EMR8_PLAMJ)
Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Solanum release: Solyc10g017630 | |
| Cluster | HCCA clusters: Cluster_282 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_07845 | No alias | agamous-like mads-box protein agl8 | 0.04 | Orthogroups_2024-Update | |
| A4A49_14828 | No alias | agamous-like mads-box protein agl104 | 0.03 | Orthogroups_2024-Update | |
| A4A49_19521 | No alias | developmental protein sepallata 1 | 0.02 | Orthogroups_2024-Update | |
| A4A49_22632 | No alias | floral homeotic protein agamous | 0.02 | Orthogroups_2024-Update | |
| At1g77980 | No alias | Agamous-like MADS-box protein AGL66... | 0.04 | Orthogroups_2024-Update | |
| Brara.C04645.1 | No alias | MADS/AGL-type transcription factor | 0.07 | Orthogroups_2024-Update | |
| Brara.E00310.1 | No alias | MADS/AGL-type transcription factor | 0.03 | Orthogroups_2024-Update | |
| Glyma.01G064100 | No alias | K-box region and MADS-box transcription factor family protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.05G163200 | No alias | K-box region and MADS-box transcription factor family protein | 0.06 | Orthogroups_2024-Update | |
| Glyma.08G282500 | No alias | AGAMOUS-like 29 | 0.02 | Orthogroups_2024-Update | |
| Glyma.08G310100 | No alias | K-box region and MADS-box transcription factor family protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.09G266400 | No alias | AGAMOUS-like 6 | 0.02 | Orthogroups_2024-Update | |
| Glyma.09G283800 | No alias | K-box region and MADS-box transcription factor family protein | 0.02 | Orthogroups_2024-Update | |
| HORVU3Hr1G095090.1 | No alias | MADS/AGL-type transcription factor | 0.03 | Orthogroups_2024-Update | |
| LOC_Os01g10504 | No alias | OsMADS3 - MADS-box family gene with MIKCc type-box, expressed | 0.03 | Orthogroups_2024-Update | |
| PSME_00013164-RA | No alias | (at4g11880 : 108.0) AGL12, AGL14, and AGL17 are all... | 0.03 | Orthogroups_2024-Update | |
| Potri.002G079000 | No alias | K-box region and MADS-box transcription factor family protein | 0.03 | Orthogroups_2024-Update | |
| Potri.009G084100 | No alias | AGAMOUS-like 62 | 0.02 | Orthogroups_2024-Update | |
| Potri.014G074100 | No alias | AGAMOUS-like 6 | 0.03 | Orthogroups_2024-Update | |
| Pp1s209_130V6 | No alias | mads-box transcription factor | 0.05 | Orthogroups_2024-Update | |
| Pp1s267_56V6 | No alias | agamous-like protein | 0.03 | Orthogroups_2024-Update | |
| Pp1s88_174V6 | No alias | mads box | 0.03 | Orthogroups_2024-Update | |
| Pp1s8_101V6 | No alias | mikc* mads-box transcription factor | 0.02 | Orthogroups_2024-Update | |
| Seita.1G308200.1 | No alias | MADS/AGL-type transcription factor | 0.03 | Orthogroups_2024-Update | |
| Seita.2G002300.1 | No alias | regulatory protein *(AP1/CAL/FUL) of floral meristem... | 0.05 | Orthogroups_2024-Update | |
| Seita.3G280400.1 | No alias | MADS/AGL-type transcription factor | 0.03 | Orthogroups_2024-Update | |
| Seita.6G194800.1 | No alias | MADS/AGL-type transcription factor | 0.03 | Orthogroups_2024-Update | |
| Sobic.001G314400.1 | No alias | MADS/AGL-type transcription factor | 0.04 | Orthogroups_2024-Update | |
| Sobic.004G250000.3 | No alias | MADS/AGL-type transcription factor | 0.03 | Orthogroups_2024-Update | |
| Solyc01g106710 | No alias | Transcription factor, MADS-box (AHRD V3.3 *** A0A103YIH6_CYNCS) | 0.02 | Orthogroups_2024-Update | |
| Solyc03g114840 | No alias | MADS-box protein 1 | 0.03 | Orthogroups_2024-Update | |
| Sopen01g045900 | No alias | SRF-type transcription factor (DNA-binding and... | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003700 | DNA-binding transcription factor activity | IEA | InterProScan predictions |
| CC | GO:0005634 | nucleus | IEA | InterProScan predictions |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Predicted GO |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Predicted GO |
| CC | GO:0009507 | chloroplast | IEP | Predicted GO |
| CC | GO:0009536 | plastid | IEP | Predicted GO |
| MF | GO:0010181 | FMN binding | IEP | Predicted GO |
| MF | GO:0032553 | ribonucleotide binding | IEP | Predicted GO |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Predicted GO |
| MF | GO:0036094 | small molecule binding | IEP | Predicted GO |
| MF | GO:0043167 | ion binding | IEP | Predicted GO |
| MF | GO:0043168 | anion binding | IEP | Predicted GO |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Predicted GO |
| MF | GO:0097747 | RNA polymerase activity | IEP | Predicted GO |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002487 | TF_Kbox | 22 | 111 |
| No external refs found! |