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  5. Solyc10g017640

Solyc10g017640


Description : MADS-box transcription factor (AHRD V3.3 *-* G7L1F7_MEDTR)


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc10g017640
Cluster HCCA clusters: Cluster_270

Target Alias Description ECC score Gene Family Method Actions
A4A49_09228 No alias mads-box protein jointless 0.03 Orthogroups_2024-Update
Brara.I02486.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Glyma.20G136600 No alias AGAMOUS-like 62 0.03 Orthogroups_2024-Update
HORVU7Hr1G054390.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
HORVU7Hr1G081070.1 No alias MADS/AGL-type transcription factor 0.04 Orthogroups_2024-Update
PSME_00050982-RA No alias (at4g11880 : 108.0) AGL12, AGL14, and AGL17 are all... 0.03 Orthogroups_2024-Update
Seita.4G093200.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Solyc01g093960 No alias MADS-box transcription factor (AHRD V3.3 *** A0A072TNM9_MEDTR) 0.04 Orthogroups_2024-Update
Solyc01g103550 No alias LOW QUALITY:Transcription factor, MADS-box (AHRD V3.3... 0.05 Orthogroups_2024-Update
Solyc05g012020 No alias Ontology_term=GO:0003700,GO:0046982 0.03 Orthogroups_2024-Update
Sopen01g037760 No alias SRF-type transcription factor (DNA-binding and... 0.04 Orthogroups_2024-Update
Sopen05g006790 No alias K-box region 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0005347 ATP transmembrane transporter activity IEP Predicted GO
MF GO:0005471 ATP:ADP antiporter activity IEP Predicted GO
MF GO:0008514 organic anion transmembrane transporter activity IEP Predicted GO
MF GO:0015215 nucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0015217 ADP transmembrane transporter activity IEP Predicted GO
MF GO:0015301 anion:anion antiporter activity IEP Predicted GO
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Predicted GO
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0099516 ion antiporter activity IEP Predicted GO
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
No external refs found!