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  5. Solyc10g017940

Solyc10g017940


Description : Photosystem II CP43 reaction center protein (AHRD V3.3 *** PSBC_CICAR)


Gene families : OG_42_0002207 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002207_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc10g017940
Cluster HCCA clusters: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
Bradi1g70724 No alias photosystem II reaction center protein C 0.03 Orthogroups_2024-Update
Bradi1g78082 No alias photosystem II reaction center protein C 0.03 Orthogroups_2024-Update
HORVU2Hr1G062030.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU2Hr1G121590.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU5Hr1G060530.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os02g24632 No alias photosystem II 44 kDa reaction center protein, putative,... 0.02 Orthogroups_2024-Update
PSME_00001174-RA No alias (p41643|psbc_pinth : 422.0) Photosystem II 44 kDa... 0.03 Orthogroups_2024-Update
PSME_00003195-RA No alias (p41643|psbc_pinth : 452.0) Photosystem II 44 kDa... 0.03 Orthogroups_2024-Update
PSME_00038449-RA No alias (p41643|psbc_pinth : 132.0) Photosystem II 44 kDa... 0.04 Orthogroups_2024-Update
Seita.4G174200.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.J018300.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.001G276500.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G299900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sopen01g011530 No alias Photosystem II protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEA InterProScan predictions
BP GO:0009767 photosynthetic electron transport chain IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
MF GO:0016168 chlorophyll binding IEA InterProScan predictions
BP GO:0019684 photosynthesis, light reaction IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004129 cytochrome-c oxidase activity IEP Predicted GO
BP GO:0005996 monosaccharide metabolic process IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0009772 photosynthetic electron transport in photosystem II IEP Predicted GO
MF GO:0015002 heme-copper terminal oxidase activity IEP Predicted GO
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Predicted GO
MF GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor IEP Predicted GO
BP GO:0017004 cytochrome complex assembly IEP Predicted GO
BP GO:0019321 pentose metabolic process IEP Predicted GO
BP GO:0019566 arabinose metabolic process IEP Predicted GO
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP Predicted GO
BP GO:0046373 L-arabinose metabolic process IEP Predicted GO
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000932 PS_antenna-like 14 98
IPR000932 PS_antenna-like 99 146
IPR000932 PS_antenna-like 148 199
No external refs found!