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  5. MA_10435143g0020

MA_10435143g0020


Description : (at3g45980 : 145.0) Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases as well as the UBC1 and UBC2 E2 ubiquitin conjugating enzymes. Lysine 146 appears to be the site of the ubiquitin addition.; HTB9; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT1G07790.1); Has 3616 Blast hits to 3469 proteins in 351 species: Archae - 0; Bacteria - 64; Metazoa - 2275; Fungi - 213; Plants - 487; Viruses - 0; Other Eukaryotes - 577 (source: NCBI BLink). & (o22582|h2b_goshi : 143.0) Histone H2B - Gossypium hirsutum (Upland cotton) & (reliability: 290.0) & (original description: no original description)


Gene families : OG_42_0000153 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000153_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_10435143g0020
Cluster HCCA clusters: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
Bradi1g08860 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Bradi1g66380 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g27760 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g54520 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g271376 No alias Histone superfamily protein 0.01 Orthogroups_2024-Update
GRMZM2G046841 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G141432 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G163939 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Glyma.11G141700 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Glyma.12G065200 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
HORVU1Hr1G058500.1 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
HORVU3Hr1G013530.1 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
HORVU3Hr1G086610.4 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU6Hr1G083110.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU7Hr1G110310.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
LOC_Os01g05900 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.04 Orthogroups_2024-Update
MA_1040421g0010 No alias (at3g45980 : 114.0) Encodes a histone 2B (H2B) protein.... 0.03 Orthogroups_2024-Update
MA_10434433g0010 No alias (at3g45980 : 175.0) Encodes a histone 2B (H2B) protein.... 0.03 Orthogroups_2024-Update
MA_10436516g0030 No alias (at3g45980 : 106.0) Encodes a histone 2B (H2B) protein.... 0.04 Orthogroups_2024-Update
MA_454575g0010 No alias (p27807|h2b1_wheat : 194.0) Histone H2B.1 - Triticum... 0.04 Orthogroups_2024-Update
MA_9293473g0010 No alias (at5g22880 : 173.0) Encodes a histone 2B (H2B) protein.... 0.04 Orthogroups_2024-Update
PSME_00000376-RA No alias (p54347|h2b4_chlre : 153.0) Histone H2B.4 (H2B-IV) -... 0.06 Orthogroups_2024-Update
PSME_00037687-RA No alias (at3g45980 : 174.0) Encodes a histone 2B (H2B) protein.... 0.03 Orthogroups_2024-Update
Seita.1G291600.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Seita.5G107600.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Solyc03g071620 No alias Histone H2B (AHRD V3.3 *** K4BHJ2_SOLLC) 0.03 Orthogroups_2024-Update
Solyc05g055440 No alias Histone H2B (AHRD V3.3 *** K4C2M0_SOLLC) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP Predicted GO
BP GO:0001932 regulation of protein phosphorylation IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004560 alpha-L-fucosidase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0015928 fucosidase activity IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019220 regulation of phosphate metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019900 kinase binding IEP Predicted GO
MF GO:0019901 protein kinase binding IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0031399 regulation of protein modification process IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0042325 regulation of phosphorylation IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0043549 regulation of kinase activity IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0045859 regulation of protein kinase activity IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051174 regulation of phosphorus metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0051338 regulation of transferase activity IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 11 114
No external refs found!