Description : (at3g19950 : 192.0) RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G55530.1); Has 11106 Blast hits to 11075 proteins in 297 species: Archae - 0; Bacteria - 6; Metazoa - 2940; Fungi - 1152; Plants - 5266; Viruses - 73; Other Eukaryotes - 1669 (source: NCBI BLink). & (reliability: 384.0) & (original description: no original description)
Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_10435153g0010 | |
Cluster | HCCA clusters: Cluster_134 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
8109 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
At2g40830 | No alias | Probable E3 ubiquitin-protein ligase RHC1A... | 0.02 | Orthogroups_2024-Update | |
Brara.C02255.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Brara.F00949.1 | No alias | E3 ubiquitin ligase *(SNIPER) | 0.03 | Orthogroups_2024-Update | |
GRMZM2G168690 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.12G131800 | No alias | RING/U-box superfamily protein | 0.04 | Orthogroups_2024-Update | |
LOC_Os08g38060 | No alias | RING finger protein, putative, expressed | 0.02 | Orthogroups_2024-Update | |
MA_77269g0010 | No alias | (at3g46620 : 139.0) zinc finger (C3HC4-type RING finger)... | 0.02 | Orthogroups_2024-Update | |
Potri.014G139400 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
Solyc02g065650 | No alias | LOW QUALITY:RING/U-box superfamily protein (AHRD V3.3... | 0.02 | Orthogroups_2024-Update | |
evm.model.contig_2210.2 | No alias | no hits & (original description: no original description) | 0.01 | Orthogroups_2024-Update | |
evm.model.contig_2287.2 | No alias | no hits & (original description: no original description) | 0.02 | Orthogroups_2024-Update | |
evm.model.contig_3384.9 | No alias | no hits & (original description: no original description) | 0.01 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000145 | exocyst | IEP | Predicted GO |
BP | GO:0006887 | exocytosis | IEP | Predicted GO |
BP | GO:0016192 | vesicle-mediated transport | IEP | Predicted GO |
BP | GO:0032940 | secretion by cell | IEP | Predicted GO |
CC | GO:0044448 | cell cortex part | IEP | Predicted GO |
BP | GO:0046903 | secretion | IEP | Predicted GO |
CC | GO:0099023 | tethering complex | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001841 | Znf_RING | 143 | 185 |
No external refs found! |