Description : (at3g54420 : 247.0) encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs.; homolog of carrot EP3-3 chitinase (EP3); FUNCTIONS IN: chitinase activity; INVOLVED IN: somatic embryogenesis, plant-type hypersensitive response; LOCATED IN: cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43590.1); Has 2660 Blast hits to 2432 proteins in 504 species: Archae - 0; Bacteria - 547; Metazoa - 34; Fungi - 178; Plants - 1776; Viruses - 22; Other Eukaryotes - 103 (source: NCBI BLink). & (p29022|chia_maize : 232.0) Endochitinase A precursor (EC 3.2.1.14) (Seed chitinase A) - Zea mays (Maize) & (reliability: 494.0) & (original description: no original description)
Gene families : OG_42_0000525 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000525_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_10435326g0010 | |
Cluster | HCCA clusters: Cluster_14 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
A4A49_35699 | No alias | endochitinase ep3 | 0.03 | Orthogroups_2024-Update | |
At3g47540 | No alias | Chitinase family protein [Source:UniProtKB/TrEMBL;Acc:F4JBK4] | 0.03 | Orthogroups_2024-Update | |
Brara.C01775.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Brara.E00367.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
GRMZM2G051943 | No alias | homolog of carrot EP3-3 chitinase | 0.03 | Orthogroups_2024-Update | |
GRMZM2G129189 | No alias | homolog of carrot EP3-3 chitinase | 0.04 | Orthogroups_2024-Update | |
MA_102538g0010 | No alias | (p29022|chia_maize : 115.0) Endochitinase A precursor... | 0.04 | Orthogroups_2024-Update | |
MA_10427514g0010 | No alias | (p29022|chia_maize : 267.0) Endochitinase A precursor... | 0.04 | Orthogroups_2024-Update | |
MA_7544918g0010 | No alias | (p29022|chia_maize : 152.0) Endochitinase A precursor... | 0.05 | Orthogroups_2024-Update | |
PSME_00019563-RA | No alias | (at3g54420 : 211.0) encodes an EP3 chitinase that is... | 0.03 | Orthogroups_2024-Update | |
PSME_00026001-RA | No alias | (p29022|chia_maize : 260.0) Endochitinase A precursor... | 0.04 | Orthogroups_2024-Update | |
PSME_00029190-RA | No alias | (p29022|chia_maize : 256.0) Endochitinase A precursor... | 0.05 | Orthogroups_2024-Update | |
PSME_00030535-RA | No alias | (at3g54420 : 248.0) encodes an EP3 chitinase that is... | 0.04 | Orthogroups_2024-Update | |
PSME_00036436-RA | No alias | (at3g54420 : 249.0) encodes an EP3 chitinase that is... | 0.05 | Orthogroups_2024-Update | |
PSME_00037636-RA | No alias | (p29022|chia_maize : 228.0) Endochitinase A precursor... | 0.06 | Orthogroups_2024-Update | |
PSME_00039570-RA | No alias | (p29023|chib_maize : 253.0) Endochitinase B precursor... | 0.05 | Orthogroups_2024-Update | |
PSME_00050706-RA | No alias | (p29022|chia_maize : 237.0) Endochitinase A precursor... | 0.04 | Orthogroups_2024-Update | |
PSME_00050767-RA | No alias | (p29022|chia_maize : 240.0) Endochitinase A precursor... | 0.06 | Orthogroups_2024-Update | |
PSME_00052222-RA | No alias | (at3g54420 : 236.0) encodes an EP3 chitinase that is... | 0.05 | Orthogroups_2024-Update | |
PSME_00052568-RA | No alias | (p29022|chia_maize : 277.0) Endochitinase A precursor... | 0.04 | Orthogroups_2024-Update | |
Sobic.006G132500.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Sobic.006G132700.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004568 | chitinase activity | IEA | InterProScan predictions |
BP | GO:0006032 | chitin catabolic process | IEA | InterProScan predictions |
BP | GO:0016998 | cell wall macromolecule catabolic process | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Predicted GO |
MF | GO:0008519 | ammonium transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0010333 | terpene synthase activity | IEP | Predicted GO |
BP | GO:0015696 | ammonium transport | IEP | Predicted GO |
MF | GO:0016491 | oxidoreductase activity | IEP | Predicted GO |
MF | GO:0016829 | lyase activity | IEP | Predicted GO |
MF | GO:0016835 | carbon-oxygen lyase activity | IEP | Predicted GO |
MF | GO:0016838 | carbon-oxygen lyase activity, acting on phosphates | IEP | Predicted GO |
MF | GO:0043565 | sequence-specific DNA binding | IEP | Predicted GO |
MF | GO:0048037 | cofactor binding | IEP | Predicted GO |
MF | GO:0051536 | iron-sulfur cluster binding | IEP | Predicted GO |
MF | GO:0051540 | metal cluster binding | IEP | Predicted GO |
MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
MF | GO:0140110 | transcription regulator activity | IEP | Predicted GO |
MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000726 | Glyco_hydro_19_cat | 32 | 231 |
No external refs found! |