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  5. Solyc10g018780

Solyc10g018780


Description : Squamosa promoter binding protein 8a


Gene families : OG_42_0000135 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000135_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc10g018780
Cluster HCCA clusters: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
A4A49_19670 No alias squamosa promoter-binding-like protein 6 0.02 Orthogroups_2024-Update
Bradi4g33770 No alias squamosa promoter binding protein-like 9 0.03 Orthogroups_2024-Update
Bradi4g34667 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.03 Orthogroups_2024-Update
Brara.I03020.1 No alias SBP-type transcription factor 0.03 Orthogroups_2024-Update
GRMZM2G414805 No alias squamosa promoter binding protein-like 10 0.02 Orthogroups_2024-Update
Glyma.05G204100 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.03 Orthogroups_2024-Update
Glyma.17G080700 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.03 Orthogroups_2024-Update
Glyma.18G005600 No alias squamosa promoter binding protein-like 2 0.03 Orthogroups_2024-Update
HORVU0Hr1G039150.3 No alias SBP-type transcription factor 0.02 Orthogroups_2024-Update
LOC_Os07g32170 No alias OsSPL13 - SBP-box gene family member, expressed 0.02 Orthogroups_2024-Update
Potri.001G398200 No alias squamosa promoter binding protein-like 5 0.04 Orthogroups_2024-Update
Potri.011G055900 No alias squamosa promoter binding protein-like 3 0.02 Orthogroups_2024-Update
Pp1s252_40V6 No alias squamosa promoter-binding 0.02 Orthogroups_2024-Update
Pp1s337_52V6 No alias squamosa promoter-binding 0.02 Orthogroups_2024-Update
Seita.5G432500.1 No alias SBP-type transcription factor 0.05 Orthogroups_2024-Update
Solyc10g078700 No alias Squamosa promoter binding protein 15 0.03 Orthogroups_2024-Update
Sopen03g033930 No alias SBP domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
MF GO:0050661 NADP binding IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
InterPro domains Description Start Stop
IPR004333 SBP_dom 166 239
No external refs found!