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  5. MA_10436441g0010

MA_10436441g0010


Description : (at3g12060 : 362.0) Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).; TRICHOME BIREFRINGENCE-LIKE 1 (TBL1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT5G06700.1); Has 1352 Blast hits to 1335 proteins in 32 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 0; Plants - 1346; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). & (reliability: 676.0) & (original description: no original description)


Gene families : OG_42_0000293 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000293_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_10436441g0010
Cluster HCCA clusters: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
A4A49_06264 No alias protein trichome birefringence 0.03 Orthogroups_2024-Update
Brara.C03373.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.E02920.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Glyma.09G109600 No alias Plant protein of unknown function (DUF828) 0.02 Orthogroups_2024-Update
HORVU7Hr1G035050.1 No alias polysaccharide O-acetyltransferase *(TBR) 0.03 Orthogroups_2024-Update
MA_128999g0010 No alias (at5g19160 : 318.0) Encodes a member of the TBL... 0.03 Orthogroups_2024-Update
MA_459495g0010 No alias (at1g60790 : 280.0) Encodes a member of the TBL... 0.03 Orthogroups_2024-Update
PSME_00011723-RA No alias (at3g62390 : 317.0) Encodes a member of the TBL... 0.03 Orthogroups_2024-Update
PSME_00020911-RA No alias (at5g06700 : 355.0) Encodes a member of the TBL... 0.04 Orthogroups_2024-Update
PSME_00039588-RA No alias (at5g19160 : 474.0) Encodes a member of the TBL... 0.05 Orthogroups_2024-Update
PSME_00040350-RA No alias (at5g06700 : 263.0) Encodes a member of the TBL... 0.03 Orthogroups_2024-Update
Potri.008G108500 No alias TRICHOME BIREFRINGENCE-LIKE 4 0.02 Orthogroups_2024-Update
Potri.010G043300 No alias Plant protein of unknown function (DUF828) 0.02 Orthogroups_2024-Update
Solyc05g005100 No alias Trichome birefringence (AHRD V3.3 *** A0A0K9NN56_ZOSMR) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0006333 chromatin assembly or disassembly IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
InterPro domains Description Start Stop
IPR026057 PC-Esterase 225 506
IPR025846 PMR5_N_dom 172 224
No external refs found!