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  5. MA_10436451g0020

MA_10436451g0020


Description : (at4g23500 : 273.0) Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G61490.3); Has 4172 Blast hits to 4159 proteins in 509 species: Archae - 6; Bacteria - 1479; Metazoa - 14; Fungi - 1128; Plants - 1399; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink). & (reliability: 546.0) & (original description: no original description)


Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_10436451g0020
Cluster HCCA clusters: Cluster_195

Target Alias Description ECC score Gene Family Method Actions
A4A49_22271 No alias putative polygalacturonase 0.03 Orthogroups_2024-Update
A4A49_41445 No alias putative polygalacturonase 0.04 Orthogroups_2024-Update
Glyma.07G244200 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.10G138100 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G146800 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G213400 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os12g36810 No alias polygalacturonase, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00027467-RA No alias (at3g61490 : 556.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
Potri.014G112100 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Solyc09g075460 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G16850.1) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
MF GO:0003883 CTP synthase activity IEP Predicted GO
MF GO:0004096 catalase activity IEP Predicted GO
MF GO:0004177 aminopeptidase activity IEP Predicted GO
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
MF GO:0004556 alpha-amylase activity IEP Predicted GO
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Predicted GO
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006098 pentose-phosphate shunt IEP Predicted GO
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Predicted GO
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Predicted GO
BP GO:0006333 chromatin assembly or disassembly IEP Predicted GO
BP GO:0006739 NADP metabolic process IEP Predicted GO
BP GO:0006753 nucleoside phosphate metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
BP GO:0009117 nucleotide metabolic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0016049 cell growth IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
BP GO:0019637 organophosphate metabolic process IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
BP GO:0040007 growth IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
MF GO:0050661 NADP binding IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:0051156 glucose 6-phosphate metabolic process IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
BP GO:1901135 carbohydrate derivative metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 9 195
No external refs found!