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Description : (at1g13040 : 395.0) Pentatricopeptide repeat (PPR-like) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G62910.1); Has 55149 Blast hits to 14680 proteins in 295 species: Archae - 3; Bacteria - 38; Metazoa - 581; Fungi - 873; Plants - 52114; Viruses - 0; Other Eukaryotes - 1540 (source: NCBI BLink). & (q76c99|rf1_orysa : 251.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 790.0) & (original description: no original description)
Gene families : OG_42_0007266 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007266_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_107848g0010 | |
| Cluster | HCCA clusters: Cluster_7 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003690 | double-stranded DNA binding | IEP | Predicted GO |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Predicted GO |
| CC | GO:0005759 | mitochondrial matrix | IEP | Predicted GO |
| CC | GO:0005783 | endoplasmic reticulum | IEP | Predicted GO |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0006352 | DNA-templated transcription, initiation | IEP | Predicted GO |
| BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Predicted GO |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
| MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
| BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
| BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Predicted GO |
| CC | GO:0031974 | membrane-enclosed lumen | IEP | Predicted GO |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
| BP | GO:0043038 | amino acid activation | IEP | Predicted GO |
| BP | GO:0043039 | tRNA aminoacylation | IEP | Predicted GO |
| MF | GO:0043169 | cation binding | IEP | Predicted GO |
| CC | GO:0043233 | organelle lumen | IEP | Predicted GO |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
| MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
| MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
| MF | GO:0051082 | unfolded protein binding | IEP | Predicted GO |
| CC | GO:0070013 | intracellular organelle lumen | IEP | Predicted GO |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 389 | 438 |
| IPR002885 | Pentatricopeptide_repeat | 251 | 299 |
| IPR002885 | Pentatricopeptide_repeat | 529 | 578 |
| IPR002885 | Pentatricopeptide_repeat | 460 | 506 |
| IPR002885 | Pentatricopeptide_repeat | 317 | 348 |
| IPR002885 | Pentatricopeptide_repeat | 358 | 387 |
| IPR002885 | Pentatricopeptide_repeat | 150 | 178 |
| IPR002885 | Pentatricopeptide_repeat | 185 | 213 |
| IPR002885 | Pentatricopeptide_repeat | 219 | 247 |
| No external refs found! |