MA_108607g0010

Description : (p34091|rl6_mescr : 343.0) 60S ribosomal protein L6 (YL16-like) - Mesembryanthemum crystallinum (Common ice plant) & (at1g18540 : 337.0) Ribosomal protein L6 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6, N-terminal (InterPro:IPR005568), Ribosomal protein L6E (InterPro:IPR000915); BEST Arabidopsis thaliana protein match is: Ribosomal protein L6 family protein (TAIR:AT1G74050.1); Has 758 Blast hits to 758 proteins in 286 species: Archae - 33; Bacteria - 0; Metazoa - 332; Fungi - 149; Plants - 117; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). & (reliability: 674.0) & (original description: no original description)

Gene families : OG_42_0002426 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002426_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Picea release: MA_108607g0010
Cluster	HCCA clusters: Cluster_166

Target	Alias	Description	ECC score	Gene Family Method
270686	No alias	Ribosomal protein L6 family protein	0.13	Orthogroups_2024-Update
At1g18540	No alias	60S ribosomal protein L6-1...	0.04	Orthogroups_2024-Update
At1g74060	No alias	60S ribosomal protein L6-2...	0.03	Orthogroups_2024-Update
Bradi3g08900	No alias	Ribosomal protein L6 family protein	0.08	Orthogroups_2024-Update
Bradi3g47410	No alias	Ribosomal protein L6 family protein	0.09	Orthogroups_2024-Update
Brara.H02417.1	No alias	component *(eL6) of large ribosomal-subunit (LSU) proteome	0.13	Orthogroups_2024-Update
Brara.I04782.1	No alias	component *(eL6) of large ribosomal-subunit (LSU) proteome	0.09	Orthogroups_2024-Update
Cre01.g011000	No alias	Ribosomal protein L6 family protein	0.14	Orthogroups_2024-Update
GRMZM2G024647	No alias	Ribosomal protein L6 family protein	0.03	Orthogroups_2024-Update
Glyma.05G184000	No alias	Ribosomal protein L6 family protein	0.09	Orthogroups_2024-Update
Glyma.08G141700	No alias	Ribosomal protein L6 family protein	0.04	Orthogroups_2024-Update
Glyma.08G151900	No alias	Ribosomal protein L6 family protein	0.06	Orthogroups_2024-Update
Glyma.15G271300	No alias	Ribosomal protein L6 family protein	0.1	Orthogroups_2024-Update
HORVU6Hr1G041750.3	No alias	component *(eL6) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
HORVU6Hr1G052600.3	No alias	component *(eL6) of large ribosomal-subunit (LSU) proteome	0.1	Orthogroups_2024-Update
Kfl00488_0040	kfl00488_0040_v1.1	(p34091\|rl6_mescr : 230.0) 60S ribosomal protein L6...	0.06	Orthogroups_2024-Update
LOC_Os02g37862	No alias	60S ribosomal protein L6, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os04g39700	No alias	60S ribosomal protein L6, putative, expressed	0.03	Orthogroups_2024-Update
PSME_00044973-RA	No alias	(p34091\|rl6_mescr : 327.0) 60S ribosomal protein L6...	0.08	Orthogroups_2024-Update
Potri.009G065800	No alias	Ribosomal protein L6 family protein	0.06	Orthogroups_2024-Update
Pp1s126_115V6	No alias	60s ribosomal protein l6	0.02	Orthogroups_2024-Update
Pp1s59_122V6	No alias	60s ribosomal protein	0.09	Orthogroups_2024-Update
Seita.1G214900.1	No alias	component *(eL6) of large ribosomal-subunit (LSU) proteome	0.1	Orthogroups_2024-Update
Seita.7G134600.1	No alias	component *(eL6) of large ribosomal-subunit (LSU) proteome	0.1	Orthogroups_2024-Update
Sobic.004G198400.1	No alias	component *(eL6) of large ribosomal-subunit (LSU) proteome	0.09	Orthogroups_2024-Update
Sobic.006G116700.1	No alias	component *(eL6) of large ribosomal-subunit (LSU) proteome	0.15	Orthogroups_2024-Update
Solyc04g014720	No alias	60S ribosomal protein L6 (AHRD V3.3 *** RL6_MESCR)	0.03	Orthogroups_2024-Update
Solyc05g054070	No alias	60S ribosomal protein L6 (AHRD V3.3 *** RL6_MESCR)	0.08	Orthogroups_2024-Update
Solyc11g012110	No alias	60S ribosomal protein L6 (AHRD V3.3 *** RL6_MESCR)	0.11	Orthogroups_2024-Update
Sopen04g006830	No alias	Ribosomal protein L6e	0.02	Orthogroups_2024-Update
Sopen05g032560	No alias	Ribosomal protein L6e	0.14	Orthogroups_2024-Update
Sopen11g006900	No alias	Ribosomal protein L6e	0.12	Orthogroups_2024-Update
evm.model.contig_2016.11	No alias	(p34091\|rl6_mescr : 131.0) 60S ribosomal protein L6...	0.11	Orthogroups_2024-Update
evm.model.tig00021127.127	No alias	(at1g74050 : 196.0) Ribosomal protein L6 family protein;...	0.12	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000149	SNARE binding	IEP	Predicted GO
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0004017	adenylate kinase activity	IEP	Predicted GO
MF	GO:0004864	protein phosphatase inhibitor activity	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
CC	GO:0005739	mitochondrion	IEP	Predicted GO
CC	GO:0005743	mitochondrial inner membrane	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006457	protein folding	IEP	Predicted GO
BP	GO:0007030	Golgi organization	IEP	Predicted GO
BP	GO:0007034	vacuolar transport	IEP	Predicted GO
BP	GO:0009966	regulation of signal transduction	IEP	Predicted GO
BP	GO:0010646	regulation of cell communication	IEP	Predicted GO
BP	GO:0010921	regulation of phosphatase activity	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
CC	GO:0016272	prefoldin complex	IEP	Predicted GO
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	Predicted GO
MF	GO:0019208	phosphatase regulator activity	IEP	Predicted GO
MF	GO:0019212	phosphatase inhibitor activity	IEP	Predicted GO
BP	GO:0019220	regulation of phosphate metabolic process	IEP	Predicted GO
BP	GO:0019725	cellular homeostasis	IEP	Predicted GO
MF	GO:0019829	cation-transporting ATPase activity	IEP	Predicted GO
CC	GO:0019866	organelle inner membrane	IEP	Predicted GO
MF	GO:0019888	protein phosphatase regulator activity	IEP	Predicted GO
MF	GO:0019905	syntaxin binding	IEP	Predicted GO
MF	GO:0022853	active ion transmembrane transporter activity	IEP	Predicted GO
BP	GO:0022900	electron transport chain	IEP	Predicted GO
BP	GO:0023051	regulation of signaling	IEP	Predicted GO
BP	GO:0031399	regulation of protein modification process	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
CC	GO:0033178	proton-transporting two-sector ATPase complex, catalytic domain	IEP	Predicted GO
BP	GO:0035303	regulation of dephosphorylation	IEP	Predicted GO
BP	GO:0035304	regulation of protein dephosphorylation	IEP	Predicted GO
MF	GO:0036442	proton-exporting ATPase activity	IEP	Predicted GO
BP	GO:0042592	homeostatic process	IEP	Predicted GO
MF	GO:0042625	ATPase coupled ion transmembrane transporter activity	IEP	Predicted GO
BP	GO:0043666	regulation of phosphoprotein phosphatase activity	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO
MF	GO:0044769	ATPase activity, coupled to transmembrane movement of ions, rotational mechanism	IEP	Predicted GO
BP	GO:0045454	cell redox homeostasis	IEP	Predicted GO
MF	GO:0046961	proton-transporting ATPase activity, rotational mechanism	IEP	Predicted GO
BP	GO:0048583	regulation of response to stimulus	IEP	Predicted GO
MF	GO:0050145	nucleoside monophosphate kinase activity	IEP	Predicted GO
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	Predicted GO
BP	GO:0051336	regulation of hydrolase activity	IEP	Predicted GO
BP	GO:0065008	regulation of biological quality	IEP	Predicted GO
CC	GO:0070469	respiratory chain	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000915	60S_ribosomal_L6E	125	231
IPR005568	Ribosomal_L6_N	2	57

External Links

No external refs found!

MA_108607g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation