MA_110g0010

Description : (at4g02750 : 501.0) Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09410.1); Has 56089 Blast hits to 14902 proteins in 275 species: Archae - 0; Bacteria - 15; Metazoa - 173; Fungi - 123; Plants - 55165; Viruses - 0; Other Eukaryotes - 613 (source: NCBI BLink). & (q76c99|rf1_orysa : 169.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1002.0) & (original description: no original description)

Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Picea release: MA_110g0010
Cluster	HCCA clusters: Cluster_7

Target	Alias	Description	ECC score	Gene Family Method
At3g03580	No alias	Pentatricopeptide repeat-containing protein At3g03580...	0.04	Orthogroups_2024-Update
At5g66520	No alias	Pentatricopeptide repeat-containing protein At5g66520...	0.02	Orthogroups_2024-Update
Brara.E03491.1	No alias	Unknown function	0.05	Orthogroups_2024-Update
GRMZM2G019689	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Orthogroups_2024-Update
GRMZM2G020008	No alias	mitochondrial RNAediting factor 1	0.02	Orthogroups_2024-Update
GRMZM2G022884	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Orthogroups_2024-Update
GRMZM2G031588	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.02	Orthogroups_2024-Update
GRMZM2G060337	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Orthogroups_2024-Update
GRMZM2G073017	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.02	Orthogroups_2024-Update
GRMZM2G158839	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Orthogroups_2024-Update
GRMZM2G163396	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Orthogroups_2024-Update
GRMZM2G168378	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Orthogroups_2024-Update
GRMZM2G331779	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Orthogroups_2024-Update
GRMZM2G430710	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Orthogroups_2024-Update
GRMZM2G456114	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.02	Orthogroups_2024-Update
GRMZM5G862936	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Orthogroups_2024-Update
HORVU4Hr1G080660.1	No alias	Unknown function	0.05	Orthogroups_2024-Update
PSME_00008064-RA	No alias	(at3g49170 : 637.0) embryo defective 2261 (EMB2261);...	0.03	Orthogroups_2024-Update
PSME_00046347-RA	No alias	(at2g13600 : 438.0) Pentatricopeptide repeat (PPR)...	0.04	Orthogroups_2024-Update
Potri.001G075800	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Orthogroups_2024-Update
Potri.017G137200	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Orthogroups_2024-Update
Potri.018G040100	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Orthogroups_2024-Update
Sobic.001G069300.2	No alias	RNA editing factor *(DEK36)	0.02	Orthogroups_2024-Update
Sobic.003G333200.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.004G312000.1	No alias	RNA editing factor *(CLB19)	0.03	Orthogroups_2024-Update
Sobic.009G155400.3	No alias	Unknown function	0.02	Orthogroups_2024-Update
Sobic.009G250700.1	No alias	Unknown function	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

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Type	GO Term	Name	Evidence	Source
MF	GO:0005488	binding	IEP	Predicted GO
BP	GO:0006644	phospholipid metabolic process	IEP	Predicted GO
BP	GO:0006650	glycerophospholipid metabolic process	IEP	Predicted GO
MF	GO:0008270	zinc ion binding	IEP	Predicted GO
MF	GO:0015095	magnesium ion transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015693	magnesium ion transport	IEP	Predicted GO
BP	GO:0030258	lipid modification	IEP	Predicted GO
MF	GO:0043167	ion binding	IEP	Predicted GO
MF	GO:0043169	cation binding	IEP	Predicted GO
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	Predicted GO
BP	GO:0046834	lipid phosphorylation	IEP	Predicted GO
BP	GO:0046854	phosphatidylinositol phosphorylation	IEP	Predicted GO
MF	GO:0046872	metal ion binding	IEP	Predicted GO
MF	GO:0046914	transition metal ion binding	IEP	Predicted GO
BP	GO:0070838	divalent metal ion transport	IEP	Predicted GO
BP	GO:0072511	divalent inorganic cation transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	406	435
IPR002885	Pentatricopeptide_repeat	437	466
IPR002885	Pentatricopeptide_repeat	215	242
IPR002885	Pentatricopeptide_repeat	274	300
IPR002885	Pentatricopeptide_repeat	642	665
IPR002885	Pentatricopeptide_repeat	378	403
IPR002885	Pentatricopeptide_repeat	243	272
IPR002885	Pentatricopeptide_repeat	469	495
IPR002885	Pentatricopeptide_repeat	566	615
IPR002885	Pentatricopeptide_repeat	302	350
IPR002885	Pentatricopeptide_repeat	140	188

External Links

No external refs found!

MA_110g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation