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Description : Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** A0A061DSI9_THECC)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Solanum release: Solyc01g095690 | |
| Cluster | HCCA clusters: Cluster_153 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 84339 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| At4g14170 | No alias | Pentatricopeptide repeat-containing protein At4g14170... | 0.03 | Orthogroups_2024-Update | |
| Bradi3g41651 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Brara.E01751.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Glyma.01G234100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.07G127400 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.09G286100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.14G194400 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.16G026000 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.03 | Orthogroups_2024-Update | |
| HORVU3Hr1G023070.1 | No alias | RNA editing factor *(OTP81) | 0.03 | Orthogroups_2024-Update | |
| HORVU3Hr1G023090.1 | No alias | RNA editing factor *(OTP81) | 0.03 | Orthogroups_2024-Update | |
| HORVU3Hr1G085770.2 | No alias | RNA editing factor *(CRR2) | 0.03 | Orthogroups_2024-Update | |
| LOC_Os01g72930 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
| LOC_Os03g08680 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os07g15570 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os07g20420 | No alias | tetratricopeptide-like helical, putative, expressed | 0.03 | Orthogroups_2024-Update | |
| LOC_Os09g38310 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os10g34720 | No alias | LOI1, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| MA_10429837g0010 | No alias | (at1g11290 : 623.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
| MA_20746g0010 | No alias | (at1g11290 : 522.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
| MA_385322g0010 | No alias | (at1g08070 : 385.0) Encodes a chloroplast RNA editing... | 0.03 | Orthogroups_2024-Update | |
| MA_81514g0010 | No alias | (at1g11290 : 694.0) Pentatricopeptide Repeat Protein... | 0.02 | Orthogroups_2024-Update | |
| PSME_00002640-RA | No alias | (at4g13650 : 724.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
| PSME_00004102-RA | No alias | (at4g02750 : 508.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| Potri.001G135400 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Seita.8G250500.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.010G189200.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sopen01g032720 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen11g024580 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000155 | phosphorelay sensor kinase activity | IEP | Predicted GO |
| MF | GO:0003684 | damaged DNA binding | IEP | Predicted GO |
| MF | GO:0004645 | phosphorylase activity | IEP | Predicted GO |
| MF | GO:0004673 | protein histidine kinase activity | IEP | Predicted GO |
| MF | GO:0004721 | phosphoprotein phosphatase activity | IEP | Predicted GO |
| BP | GO:0005975 | carbohydrate metabolic process | IEP | Predicted GO |
| BP | GO:0006470 | protein dephosphorylation | IEP | Predicted GO |
| MF | GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | IEP | Predicted GO |
| MF | GO:0008184 | glycogen phosphorylase activity | IEP | Predicted GO |
| BP | GO:0016311 | dephosphorylation | IEP | Predicted GO |
| MF | GO:0016775 | phosphotransferase activity, nitrogenous group as acceptor | IEP | Predicted GO |
| MF | GO:0016853 | isomerase activity | IEP | Predicted GO |
| MF | GO:0051087 | chaperone binding | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR032867 | DYW_dom | 798 | 919 |
| IPR002885 | Pentatricopeptide_repeat | 317 | 360 |
| IPR002885 | Pentatricopeptide_repeat | 624 | 668 |
| IPR002885 | Pentatricopeptide_repeat | 520 | 568 |
| IPR002885 | Pentatricopeptide_repeat | 451 | 497 |
| IPR002885 | Pentatricopeptide_repeat | 696 | 721 |
| IPR002885 | Pentatricopeptide_repeat | 596 | 620 |
| No external refs found! |