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  5. MA_11138g0010

MA_11138g0010


Description : (at5g08490 : 615.0) Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21300.1); Has 47451 Blast hits to 12929 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 30; Plants - 46987; Viruses - 0; Other Eukaryotes - 385 (source: NCBI BLink). & (q76c99|rf1_orysa : 126.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1230.0) & (original description: no original description)


Gene families : OG_42_0009363 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009363_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_11138g0010
Cluster HCCA clusters: Cluster_156

Target Alias Description ECC score Gene Family Method Actions
Bradi5g10954 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
PSME_00046484-RA No alias (at5g08490 : 577.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
Seita.7G108300.1 No alias RNA editing factor *(SLG1) 0.04 Orthogroups_2024-Update
Sobic.006G089900.1 No alias RNA editing factor *(SLG1) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 434 459
IPR002885 Pentatricopeptide_repeat 871 894
IPR002885 Pentatricopeptide_repeat 770 795
IPR002885 Pentatricopeptide_repeat 131 155
IPR002885 Pentatricopeptide_repeat 561 609
IPR002885 Pentatricopeptide_repeat 695 742
IPR002885 Pentatricopeptide_repeat 258 303
IPR002885 Pentatricopeptide_repeat 796 843
IPR002885 Pentatricopeptide_repeat 460 506
IPR002885 Pentatricopeptide_repeat 156 204
IPR002885 Pentatricopeptide_repeat 358 406
No external refs found!