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  5. MA_12028g0010

MA_12028g0010


Description : (at2g01940 : 315.0) May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells.; SHOOT GRAVITROPISM 5 (SGR5); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 14 (TAIR:AT1G68130.1); Has 13187 Blast hits to 8766 proteins in 255 species: Archae - 0; Bacteria - 0; Metazoa - 12025; Fungi - 55; Plants - 746; Viruses - 1; Other Eukaryotes - 360 (source: NCBI BLink). & (reliability: 630.0) & (original description: no original description)


Gene families : OG_42_0000119 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000119_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_12028g0010
Cluster HCCA clusters: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
93509 No alias C2H2 and C2HC zinc fingers superfamily protein 0.05 Orthogroups_2024-Update
A4A49_29739 No alias protein shoot gravitropism 5 0.02 Orthogroups_2024-Update
At2g02070 No alias Protein indeterminate-domain 5, chloroplastic... 0.03 Orthogroups_2024-Update
At5g60470 No alias C2H2 and C2HC zinc fingers superfamily protein... 0.04 Orthogroups_2024-Update
Brara.B02772.1 No alias C2H2 subclass IDD transcription factor 0.04 Orthogroups_2024-Update
Brara.I02048.1 No alias C2H2 subclass IDD transcription factor 0.03 Orthogroups_2024-Update
Brara.I03408.1 No alias C2H2 subclass IDD transcription factor 0.04 Orthogroups_2024-Update
Glyma.02G153900 No alias indeterminate(ID)-domain 2 0.02 Orthogroups_2024-Update
Glyma.10G029700 No alias indeterminate(ID)-domain 12 0.05 Orthogroups_2024-Update
Glyma.16G141100 No alias C2H2-like zinc finger protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G036710.3 No alias C2H2 subclass IDD transcription factor 0.03 Orthogroups_2024-Update
HORVU4Hr1G064740.2 No alias C2H2 subclass IDD transcription factor 0.04 Orthogroups_2024-Update
LOC_Os02g31890 No alias ZOS2-08 - C2H2 zinc finger protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os03g10140 No alias ZOS3-04 - C2H2 zinc finger protein, expressed 0.02 Orthogroups_2024-Update
PSME_00007148-RA No alias (at3g50700 : 335.0) zinc finger protein, similar to... 0.04 Orthogroups_2024-Update
Potri.005G215100 No alias C2H2 and C2HC zinc fingers superfamily protein 0.03 Orthogroups_2024-Update
Potri.008G142500 No alias indeterminate(ID)-domain 5 0.03 Orthogroups_2024-Update
Pp1s43_228V6 No alias nucleic acid binding 0.05 Orthogroups_2024-Update
Pp1s63_51V6 No alias nucleic acid binding 0.03 Orthogroups_2024-Update
Sobic.001G242900.1 No alias C2H2 subclass IDD transcription factor 0.04 Orthogroups_2024-Update
Solyc05g054030 No alias Zinc finger family protein (AHRD V3.3 *** B9HJL4_POPTR) 0.03 Orthogroups_2024-Update
Sopen01g042900 No alias Zinc finger, C2H2 type 0.02 Orthogroups_2024-Update
Sopen07g027520 No alias hypothetical protein 0.02 Orthogroups_2024-Update
Sopen11g027970 No alias Zinc finger, C2H2 type 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004605 phosphatidate cytidylyltransferase activity IEP Predicted GO
BP GO:0006644 phospholipid metabolic process IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
BP GO:0006655 phosphatidylglycerol biosynthetic process IEP Predicted GO
BP GO:0008610 lipid biosynthetic process IEP Predicted GO
BP GO:0008654 phospholipid biosynthetic process IEP Predicted GO
MF GO:0015399 primary active transmembrane transporter activity IEP Predicted GO
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
BP GO:0032048 cardiolipin metabolic process IEP Predicted GO
BP GO:0032049 cardiolipin biosynthetic process IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Predicted GO
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Predicted GO
BP GO:0044255 cellular lipid metabolic process IEP Predicted GO
BP GO:0045017 glycerolipid biosynthetic process IEP Predicted GO
BP GO:0046471 phosphatidylglycerol metabolic process IEP Predicted GO
BP GO:0046474 glycerophospholipid biosynthetic process IEP Predicted GO
BP GO:0046486 glycerolipid metabolic process IEP Predicted GO
MF GO:0070567 cytidylyltransferase activity IEP Predicted GO
BP GO:0090407 organophosphate biosynthetic process IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
InterPro domains Description Start Stop
IPR013087 Znf_C2H2_type 217 239
No external refs found!