Description : (p27806|h1_wheat : 89.7) Histone H1 - Triticum aestivum (Wheat) & (at2g18050 : 87.8) encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA.; histone H1-3 (HIS1-3); FUNCTIONS IN: DNA binding, nucleosomal DNA binding; INVOLVED IN: response to water deprivation, nucleosome assembly, response to abscisic acid stimulus; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT2G30620.1); Has 1479 Blast hits to 1252 proteins in 183 species: Archae - 0; Bacteria - 2; Metazoa - 726; Fungi - 41; Plants - 482; Viruses - 0; Other Eukaryotes - 228 (source: NCBI BLink). & (reliability: 175.6) & (original description: no original description)
Gene families : OG_42_0000689 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000689_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_12062g0020 | |
Cluster | HCCA clusters: Cluster_17 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
HORVU2Hr1G094390.5 | No alias | linker histone *(H1) | 0.03 | Orthogroups_2024-Update | |
HORVU7Hr1G012850.1 | No alias | linker histone *(H1) | 0.03 | Orthogroups_2024-Update | |
MA_5951905g0010 | No alias | (p08283|h1_pea : 84.3) Histone H1 (PsH1b) (PsH1b-40) -... | 0.03 | Orthogroups_2024-Update | |
MA_6409g0010 | No alias | (original description: no original description) | 0.03 | Orthogroups_2024-Update | |
PSME_00051763-RA | No alias | (original description: no original description) | 0.03 | Orthogroups_2024-Update | |
Potri.010G076800 | No alias | winged-helix DNA-binding transcription factor family protein | 0.02 | Orthogroups_2024-Update | |
evm.model.tig00021123.25 | No alias | no hits & (original description: no original description) | 0.01 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000786 | nucleosome | IEA | InterProScan predictions |
MF | GO:0003677 | DNA binding | IEA | InterProScan predictions |
CC | GO:0005634 | nucleus | IEA | InterProScan predictions |
BP | GO:0006334 | nucleosome assembly | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004888 | transmembrane signaling receptor activity | IEP | Predicted GO |
MF | GO:0004970 | ionotropic glutamate receptor activity | IEP | Predicted GO |
MF | GO:0005230 | extracellular ligand-gated ion channel activity | IEP | Predicted GO |
MF | GO:0005507 | copper ion binding | IEP | Predicted GO |
BP | GO:0005991 | trehalose metabolic process | IEP | Predicted GO |
BP | GO:0005992 | trehalose biosynthetic process | IEP | Predicted GO |
MF | GO:0008066 | glutamate receptor activity | IEP | Predicted GO |
BP | GO:0009312 | oligosaccharide biosynthetic process | IEP | Predicted GO |
MF | GO:0015276 | ligand-gated ion channel activity | IEP | Predicted GO |
BP | GO:0016051 | carbohydrate biosynthetic process | IEP | Predicted GO |
MF | GO:0022824 | transmitter-gated ion channel activity | IEP | Predicted GO |
MF | GO:0022834 | ligand-gated channel activity | IEP | Predicted GO |
MF | GO:0022835 | transmitter-gated channel activity | IEP | Predicted GO |
MF | GO:0030594 | neurotransmitter receptor activity | IEP | Predicted GO |
BP | GO:0034637 | cellular carbohydrate biosynthetic process | IEP | Predicted GO |
MF | GO:0038023 | signaling receptor activity | IEP | Predicted GO |
BP | GO:0046351 | disaccharide biosynthetic process | IEP | Predicted GO |
MF | GO:0060089 | molecular transducer activity | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR005818 | Histone_H1/H5_H15 | 58 | 85 |
No external refs found! |