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Description : (at3g22470 : 317.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G12300.1); Has 71386 Blast hits to 15586 proteins in 313 species: Archae - 4; Bacteria - 76; Metazoa - 1075; Fungi - 1368; Plants - 66381; Viruses - 0; Other Eukaryotes - 2482 (source: NCBI BLink). & (q76c99|rf1_orysa : 248.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 634.0) & (original description: no original description)
Gene families : OG_42_0001385 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001385_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_122851g0010 | |
| Cluster | HCCA clusters: Cluster_119 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| MA_12730g0010 | No alias | (at5g55840 : 459.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
| MA_68479g0010 | No alias | (at1g62910 : 405.0) Pentatricopeptide repeat (PPR)... | 0.05 | Orthogroups_2024-Update | |
| PSME_00040761-RA | No alias | (at5g39710 : 341.0) EMBRYO DEFECTIVE 2745 (EMB2745);... | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
| MF | GO:0043169 | cation binding | IEP | Predicted GO |
| MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
| MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 105 | 136 |
| IPR002885 | Pentatricopeptide_repeat | 76 | 104 |
| IPR002885 | Pentatricopeptide_repeat | 282 | 330 |
| IPR002885 | Pentatricopeptide_repeat | 402 | 451 |
| IPR002885 | Pentatricopeptide_repeat | 332 | 381 |
| IPR002885 | Pentatricopeptide_repeat | 212 | 261 |
| IPR002885 | Pentatricopeptide_repeat | 142 | 191 |
| No external refs found! |