Description : (at5g42200 : 80.1) RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G49220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 160.2) & (original description: no original description)
Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_129306g0010 | |
Cluster | HCCA clusters: Cluster_45 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
A4A49_36505 | No alias | e3 ubiquitin-protein ligase atl6 | 0.02 | Orthogroups_2024-Update | |
At2g17450 | No alias | Probable E3 ubiquitin-protein ligase ATL44... | 0.02 | Orthogroups_2024-Update | |
At2g42360 | No alias | E3 ubiquitin-protein ligase ATL41... | 0.02 | Orthogroups_2024-Update | |
Bradi2g49152 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
Brara.G03117.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.02 | Orthogroups_2024-Update | |
Glyma.08G070100 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.08G177000 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
HORVU6Hr1G011010.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
MA_107765g0010 | No alias | (at1g72200 : 140.0) RING/U-box superfamily protein;... | 0.04 | Orthogroups_2024-Update | |
MA_5319g0010 | No alias | (at1g49230 : 120.0) RING/U-box superfamily protein;... | 0.04 | Orthogroups_2024-Update | |
Pp1s41_270V6 | No alias | zinc finger (c3hc4-type ring finger) family protein | 0.01 | Orthogroups_2024-Update | |
Seita.2G087800.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.006G184500.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.02 | Orthogroups_2024-Update | |
Solyc03g112340 | No alias | RING/U-box superfamily protein (AHRD V3.3 *** AT3G05200.1) | 0.03 | Orthogroups_2024-Update | |
evm.model.tig00020684.6 | No alias | no hits & (original description: no original description) | 0.01 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004176 | ATP-dependent peptidase activity | IEP | Predicted GO |
BP | GO:0006820 | anion transport | IEP | Predicted GO |
BP | GO:0006835 | dicarboxylic acid transport | IEP | Predicted GO |
BP | GO:0015711 | organic anion transport | IEP | Predicted GO |
BP | GO:0015740 | C4-dicarboxylate transport | IEP | Predicted GO |
BP | GO:0015743 | malate transport | IEP | Predicted GO |
BP | GO:0015849 | organic acid transport | IEP | Predicted GO |
CC | GO:0019013 | viral nucleocapsid | IEP | Predicted GO |
MF | GO:0031625 | ubiquitin protein ligase binding | IEP | Predicted GO |
MF | GO:0042393 | histone binding | IEP | Predicted GO |
MF | GO:0044389 | ubiquitin-like protein ligase binding | IEP | Predicted GO |
CC | GO:0044423 | virion part | IEP | Predicted GO |
BP | GO:0046942 | carboxylic acid transport | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001841 | Znf_RING | 84 | 128 |
No external refs found! |