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Description : (at4g13650 : 505.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G16480.1); Has 61118 Blast hits to 14026 proteins in 284 species: Archae - 2; Bacteria - 18; Metazoa - 154; Fungi - 167; Plants - 59907; Viruses - 0; Other Eukaryotes - 870 (source: NCBI BLink). & (q76c99|rf1_orysa : 159.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1010.0) & (original description: no original description)
Gene families : OG_42_0010321 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0010321_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_129805g0010 | |
| Cluster | HCCA clusters: Cluster_83 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| PSME_00014131-RA | No alias | (at4g02750 : 337.0) Tetratricopeptide repeat (TPR)-like... | 0.05 | Orthogroups_2024-Update | |
| PSME_00055763-RA | No alias | (at2g13600 : 521.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
| PSME_00056315-RA | No alias | (at3g12770 : 566.0) Encodes a pentatricopeptide repeat... | 0.04 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005488 | binding | IEP | Predicted GO |
| MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
| MF | GO:0043167 | ion binding | IEP | Predicted GO |
| MF | GO:0043169 | cation binding | IEP | Predicted GO |
| MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
| MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 114 | 161 |
| IPR002885 | Pentatricopeptide_repeat | 641 | 686 |
| IPR002885 | Pentatricopeptide_repeat | 344 | 392 |
| IPR002885 | Pentatricopeptide_repeat | 213 | 259 |
| IPR002885 | Pentatricopeptide_repeat | 539 | 586 |
| IPR002885 | Pentatricopeptide_repeat | 312 | 341 |
| IPR002885 | Pentatricopeptide_repeat | 420 | 446 |
| IPR002885 | Pentatricopeptide_repeat | 614 | 639 |
| IPR002885 | Pentatricopeptide_repeat | 479 | 508 |
| IPR002885 | Pentatricopeptide_repeat | 714 | 739 |
| IPR002885 | Pentatricopeptide_repeat | 448 | 477 |
| IPR002885 | Pentatricopeptide_repeat | 25 | 46 |
| IPR002885 | Pentatricopeptide_repeat | 176 | 211 |
| No external refs found! |