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  5. MA_13022g0010

MA_13022g0010


Description : (at2g13600 : 530.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 46660 Blast hits to 13875 proteins in 226 species: Archae - 0; Bacteria - 4; Metazoa - 74; Fungi - 58; Plants - 45878; Viruses - 0; Other Eukaryotes - 646 (source: NCBI BLink). & (q76c99|rf1_orysa : 124.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1060.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_13022g0010
Cluster HCCA clusters: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
412514 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g36470 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.11G213300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
MA_114722g0010 No alias (at1g11290 : 600.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00001035-RA No alias (at1g16480 : 699.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00002609-RA No alias (at1g11290 : 641.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00007181-RA No alias (at3g03580 : 567.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00007759-RA No alias (at3g12770 : 656.0) Encodes a pentatricopeptide repeat... 0.06 Orthogroups_2024-Update
PSME_00010400-RA No alias (at4g02750 : 490.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00011508-RA No alias (at2g27610 : 744.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00015660-RA No alias (at5g13230 : 657.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00016653-RA No alias (at3g02010 : 685.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00016832-RA No alias (at4g18750 : 587.0) Encodes a pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00017531-RA No alias (at1g11290 : 661.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00021863-RA No alias (at2g22070 : 612.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00023451-RA No alias (at1g11290 : 535.0) Pentatricopeptide Repeat Protein... 0.06 Orthogroups_2024-Update
PSME_00024530-RA No alias (at4g18750 : 707.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00025245-RA No alias (at3g03580 : 656.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00028931-RA No alias (at3g25970 : 541.0) Pentatricopeptide repeat (PPR)... 0.06 Orthogroups_2024-Update
PSME_00031955-RA No alias (at1g11290 : 710.0) Pentatricopeptide Repeat Protein... 0.05 Orthogroups_2024-Update
PSME_00033965-RA No alias (at2g27610 : 573.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00036495-RA No alias (at1g11290 : 559.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00037812-RA No alias (at4g13650 : 600.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00041541-RA No alias (at3g12770 : 598.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
PSME_00046347-RA No alias (at2g13600 : 438.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00048055-RA No alias (at4g13650 : 598.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00051698-RA No alias (at3g57430 : 715.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
PSME_00051765-RA No alias (at3g03580 : 693.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00055621-RA No alias (at1g16480 : 701.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00056121-RA No alias (at4g13650 : 672.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00056153-RA No alias (at2g13600 : 519.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00056779-RA No alias (at4g13650 : 709.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
PSME_00056965-RA No alias (at4g39530 : 592.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00056966-RA No alias (at4g13650 : 674.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
Potri.001G019500 No alias SLOW GROWTH 1 0.03 Orthogroups_2024-Update
Seita.3G224300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G282300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G380100.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc01g006920 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc01g081560 No alias LOW QUALITY:Pentatricopeptide repeat-containing protein... 0.02 Orthogroups_2024-Update
Solyc01g100800 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc03g007840 No alias Pentatricopeptide repeat-containing protein, putative... 0.03 Orthogroups_2024-Update
Solyc03g063690 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc03g093630 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc07g042760 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc07g055310 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc11g007230 No alias LOW QUALITY:Pentatricopeptide repeat-containing protein... 0.03 Orthogroups_2024-Update
Solyc11g011860 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.02 Orthogroups_2024-Update
Solyc11g071370 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 593 619
IPR002885 Pentatricopeptide_repeat 525 548
IPR002885 Pentatricopeptide_repeat 349 394
IPR002885 Pentatricopeptide_repeat 248 295
IPR002885 Pentatricopeptide_repeat 450 496
IPR002885 Pentatricopeptide_repeat 118 165
IPR002885 Pentatricopeptide_repeat 86 116
No external refs found!