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  5. MA_13396g0020

MA_13396g0020


Description : (at5g20620 : 280.0) encodes a ubiquitin polyprotein.; ubiquitin 4 (UBQ4); INVOLVED IN: protein modification process, protein ubiquitination involved in ubiquitin-dependent protein catabolic process, ubiquitin-dependent protein catabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: polyubiquitin 10 (TAIR:AT4G05320.4); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p14624|ubiq_chlre : 104.0) Ubiquitin - Chlamydomonas reinhardtii & (reliability: 560.0) & (original description: no original description)


Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_13396g0020
Cluster HCCA clusters: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
At4g02970 No alias Function unknown 0.03 Orthogroups_2024-Update
Glyma.13G176100 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
HORVU7Hr1G107010.1 No alias UBQ ubiquitin-fold protein 0.02 Orthogroups_2024-Update
MA_10435699g0010 No alias (at2g47110 : 207.0) polyubiquitin gene; ubiquitin 6... 0.03 Orthogroups_2024-Update
MA_15493g0010 No alias (at5g03240 : 175.0) encodes ubiquitin that is attached... 0.05 Orthogroups_2024-Update
MA_4040g0010 No alias (at5g03240 : 338.0) encodes ubiquitin that is attached... 0.03 Orthogroups_2024-Update
Mp2g17420.1 No alias ubiquitin-fold protein (UBQ) 0.02 Orthogroups_2024-Update
Pp1s127_93V6 No alias polyubiquitin 2 0.02 Orthogroups_2024-Update
Seita.5G081000.1 No alias UBQ ubiquitin-fold protein 0.03 Orthogroups_2024-Update
Sobic.003G403700.1 No alias UBQ ubiquitin-fold protein 0.03 Orthogroups_2024-Update
Sobic.010G223600.1 No alias UBQ ubiquitin-fold protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006820 anion transport IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0033897 ribonuclease T2 activity IEP Predicted GO
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 144 210
IPR000626 Ubiquitin_dom 258 305
IPR000626 Ubiquitin_dom 68 138
No external refs found!