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  5. Solyc10g047120

Solyc10g047120


Description : tRNA (Guanine(10)-N2)-methyltransferase (AHRD V3.3 *** A0A0B0N5L8_GOSAR)


Gene families : OG_42_0006012 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006012_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc10g047120
Cluster HCCA clusters: Cluster_287

Target Alias Description ECC score Gene Family Method Actions
At3g26410 No alias tRNA modification 11 protein [Source:UniProtKB/TrEMBL;Acc:Q9LIN4] 0.03 Orthogroups_2024-Update
Brara.F03274.1 No alias component *(TRM11) of TRM11-TRM112 tRNA... 0.05 Orthogroups_2024-Update
Cre08.g359100 No alias methyltransferases;nucleic acid binding 0.04 Orthogroups_2024-Update
Pp1s142_26V6 No alias rna methylase 0.02 Orthogroups_2024-Update
Sobic.004G177100.1 No alias component *(TRM11) of TRM11-TRM112 tRNA... 0.06 Orthogroups_2024-Update
Sopen10g017280 No alias Putative RNA methylase family UPF0020 0.03 Orthogroups_2024-Update
evm.model.contig_4439.4 No alias (at3g26410 : 186.0) methyltransferases;nucleic acid... 0.03 Orthogroups_2024-Update
evm.model.tig00000093.66 No alias (at3g26410 : 83.6) methyltransferases;nucleic acid... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
CC GO:0000502 proteasome complex IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004797 thymidine kinase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0009894 regulation of catabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019136 deoxynucleoside kinase activity IEP Predicted GO
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predicted GO
MF GO:0019206 nucleoside kinase activity IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042176 regulation of protein catabolic process IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
BP GO:0051246 regulation of protein metabolic process IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
CC GO:1905368 peptidase complex IEP Predicted GO
CC GO:1905369 endopeptidase complex IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000241 RNA_methylase_dom 196 320
No external refs found!