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  5. MA_138711g0010

MA_138711g0010


Description : (at1g13570 : 88.6) F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G56370.2); Has 1866 Blast hits to 1838 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1866; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 177.2) & (original description: no original description)


Gene families : OG_42_0000312 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000312_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_138711g0010
Cluster HCCA clusters: Cluster_91

Target Alias Description ECC score Gene Family Method Actions
MA_9639040g0010 No alias (at1g13570 : 82.8) F-box/RNI-like superfamily protein;... 0.04 Orthogroups_2024-Update
Seita.6G175100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc11g011520 No alias No description available 0.03 Orthogroups_2024-Update
Sopen08g023490 No alias hypothetical protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
CC GO:0031226 intrinsic component of plasma membrane IEP Predicted GO
MF GO:0033897 ribonuclease T2 activity IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
CC GO:0046658 anchored component of plasma membrane IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!