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  5. Solyc10g047410

Solyc10g047410


Description : Photosystem II CP43 reaction center protein (AHRD V3.3 *-* PSBC_SOLLC)


Gene families : OG_42_0002207 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002207_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc10g047410
Cluster HCCA clusters: Cluster_147

Target Alias Description ECC score Gene Family Method Actions
137689 No alias photosystem II reaction center protein C 0.04 Orthogroups_2024-Update
Bradi1g70724 No alias photosystem II reaction center protein C 0.05 Orthogroups_2024-Update
Bradi1g78082 No alias photosystem II reaction center protein C 0.05 Orthogroups_2024-Update
HORVU2Hr1G062030.1 No alias Unknown function 0.05 Orthogroups_2024-Update
HORVU2Hr1G121590.1 No alias Unknown function 0.05 Orthogroups_2024-Update
HORVU5Hr1G060530.1 No alias Unknown function 0.04 Orthogroups_2024-Update
PSME_00001174-RA No alias (p41643|psbc_pinth : 422.0) Photosystem II 44 kDa... 0.08 Orthogroups_2024-Update
PSME_00003195-RA No alias (p41643|psbc_pinth : 452.0) Photosystem II 44 kDa... 0.05 Orthogroups_2024-Update
PSME_00038449-RA No alias (p41643|psbc_pinth : 132.0) Photosystem II 44 kDa... 0.07 Orthogroups_2024-Update
Seita.4G174200.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Seita.J018300.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Sobic.001G276500.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.001G299900.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Solyc12g038080 No alias LOW QUALITY:Photosystem II CP43 reaction center protein... 0.04 Orthogroups_2024-Update
Sopen01g011530 No alias Photosystem II protein 0.06 Orthogroups_2024-Update
Sopen07g019860 No alias Photosystem II protein 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEA InterProScan predictions
BP GO:0009767 photosynthetic electron transport chain IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
MF GO:0016168 chlorophyll binding IEA InterProScan predictions
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEA InterProScan predictions
BP GO:0019684 photosynthesis, light reaction IEA InterProScan predictions
MF GO:0048038 quinone binding IEA InterProScan predictions
MF GO:0051287 NAD binding IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003725 double-stranded RNA binding IEP Predicted GO
BP GO:0006120 mitochondrial electron transport, NADH to ubiquinone IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009579 thylakoid IEP Predicted GO
BP GO:0009772 photosynthetic electron transport in photosystem II IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
BP GO:0017004 cytochrome complex assembly IEP Predicted GO
BP GO:0022904 respiratory electron transport chain IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001135 NADH_Q_OxRdtase_suD 14 52
IPR000932 PS_antenna-like 50 175
No external refs found!