Description : (at1g10970 : 388.0) A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root and shoot. Expression is regulated by copper, but response to copper deficiency is detected only after three weeks of deficiency.; zinc transporter 4 precursor (ZIP4); CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: iron regulated transporter 3 (TAIR:AT1G60960.1); Has 2241 Blast hits to 2085 proteins in 351 species: Archae - 0; Bacteria - 278; Metazoa - 580; Fungi - 588; Plants - 521; Viruses - 0; Other Eukaryotes - 274 (source: NCBI BLink). & (reliability: 776.0) & (original description: no original description)
Gene families : OG_42_0000242 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000242_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_140715g0010 | |
Cluster | HCCA clusters: Cluster_194 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cre07.g355150 | No alias | zinc transporter 5 precursor | 0.01 | Orthogroups_2024-Update | |
Glyma.11G169300 | No alias | ZIP metal ion transporter family | 0.04 | Orthogroups_2024-Update | |
Kfl00040_0120 | kfl00040_0120_v1.1 | (at4g19690 : 212.0) Fe(II) transport protein (IRT1);... | 0.01 | Orthogroups_2024-Update | |
LOC_Os05g07210 | No alias | metal cation transporter, putative, expressed | 0.03 | Orthogroups_2024-Update | |
Mp4g19340.1 | No alias | metal cation transporter (ZIP) | 0.04 | Orthogroups_2024-Update | |
PSME_00021692-RA | No alias | (at1g10970 : 287.0) A member of Zrt- and Irt-related... | 0.03 | Orthogroups_2024-Update | |
Potri.015G117700 | No alias | zinc transporter 10 precursor | 0.03 | Orthogroups_2024-Update | |
Seita.2G090600.1 | No alias | metal cation transporter *(ZIP) | 0.03 | Orthogroups_2024-Update | |
evm.model.contig_643.2 | No alias | (original description: no original description) | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0016020 | membrane | IEA | InterProScan predictions |
BP | GO:0030001 | metal ion transport | IEA | InterProScan predictions |
MF | GO:0046873 | metal ion transmembrane transporter activity | IEA | InterProScan predictions |
BP | GO:0055085 | transmembrane transport | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004518 | nuclease activity | IEP | Predicted GO |
MF | GO:0004525 | ribonuclease III activity | IEP | Predicted GO |
MF | GO:0004527 | exonuclease activity | IEP | Predicted GO |
MF | GO:0005488 | binding | IEP | Predicted GO |
MF | GO:0005515 | protein binding | IEP | Predicted GO |
BP | GO:0005991 | trehalose metabolic process | IEP | Predicted GO |
BP | GO:0005992 | trehalose biosynthetic process | IEP | Predicted GO |
BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
BP | GO:0006396 | RNA processing | IEP | Predicted GO |
MF | GO:0008408 | 3'-5' exonuclease activity | IEP | Predicted GO |
BP | GO:0009312 | oligosaccharide biosynthetic process | IEP | Predicted GO |
BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
CC | GO:0030684 | preribosome | IEP | Predicted GO |
CC | GO:0030688 | preribosome, small subunit precursor | IEP | Predicted GO |
MF | GO:0032296 | double-stranded RNA-specific ribonuclease activity | IEP | Predicted GO |
MF | GO:0033926 | glycopeptide alpha-N-acetylgalactosaminidase activity | IEP | Predicted GO |
BP | GO:0046351 | disaccharide biosynthetic process | IEP | Predicted GO |
MF | GO:0140103 | catalytic activity, acting on a glycoprotein | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR003689 | ZIP | 57 | 411 |
No external refs found! |