MA_140715g0010


Description : (at1g10970 : 388.0) A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root and shoot. Expression is regulated by copper, but response to copper deficiency is detected only after three weeks of deficiency.; zinc transporter 4 precursor (ZIP4); CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: iron regulated transporter 3 (TAIR:AT1G60960.1); Has 2241 Blast hits to 2085 proteins in 351 species: Archae - 0; Bacteria - 278; Metazoa - 580; Fungi - 588; Plants - 521; Viruses - 0; Other Eukaryotes - 274 (source: NCBI BLink). & (reliability: 776.0) & (original description: no original description)


Gene families : OG_42_0000242 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000242_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_140715g0010
Cluster HCCA clusters: Cluster_194

Target Alias Description ECC score Gene Family Method Actions
Cre07.g355150 No alias zinc transporter 5 precursor 0.01 Orthogroups_2024-Update
Glyma.11G169300 No alias ZIP metal ion transporter family 0.04 Orthogroups_2024-Update
Kfl00040_0120 kfl00040_0120_v1.1 (at4g19690 : 212.0) Fe(II) transport protein (IRT1);... 0.01 Orthogroups_2024-Update
LOC_Os05g07210 No alias metal cation transporter, putative, expressed 0.03 Orthogroups_2024-Update
Mp4g19340.1 No alias metal cation transporter (ZIP) 0.04 Orthogroups_2024-Update
PSME_00021692-RA No alias (at1g10970 : 287.0) A member of Zrt- and Irt-related... 0.03 Orthogroups_2024-Update
Potri.015G117700 No alias zinc transporter 10 precursor 0.03 Orthogroups_2024-Update
Seita.2G090600.1 No alias metal cation transporter *(ZIP) 0.03 Orthogroups_2024-Update
evm.model.contig_643.2 No alias (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA InterProScan predictions
BP GO:0030001 metal ion transport IEA InterProScan predictions
MF GO:0046873 metal ion transmembrane transporter activity IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
BP GO:0009312 oligosaccharide biosynthetic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0030688 preribosome, small subunit precursor IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
InterPro domains Description Start Stop
IPR003689 ZIP 57 411
No external refs found!